SMTL ID : 1ztl.1

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with N-[4-Guanidino-1-(thiazole-2-carbonyl)-butyl]-2-{6-oxo-5-[(quinolin-8-ylmethyl)-amino]-2-m-tolyl-6H-pyrimidin-1-yl}-acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.37, Q.77, K.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.77 Salt bridges: A:K.98 SO4.2: 2 residues within 4Å: Chain A: Y.134, K.185 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.185

1 x 737: N-[4-GUANIDINO-1-(THIAZOLE-2-CARBONYL)-BUTYL]-2-{6-OXO-5-[(QUINOLIN-8-YLMETHYL)-AMINO]-2-M-TOLYL-6H-PYRIMIDIN-1-YL}-ACETAMIDE(Covalent)

737.3: 14 residues within 4Å: Chain A: H.44, D.182, A.183, C.184, K.185, G.186, D.187, S.188, S.207, W.208, G.209, G.211, C.212, G.219 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.44 Hydrogen bonds: A:A.183, A:G.186, A:D.187, A:S.188, A:S.188, A:S.207, A:W.208, A:G.209, A:G.209, A:G.211 Water bridges: A:G.211, A:G.211, A:V.220 Salt bridges: A:D.182 pi-Cation interactions: A:H.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagafuji, P. et al., Pyrimidinone Inhibitors of a Thrombolytic Protease. To be Published

Release Date

2006-05-09

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI

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