SMTL ID : 2a94.1

Structure of Plasmodium falciparum lactate dehydrogenase complexed to APADH.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x AP0: ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED(Non-covalent)

AP0.1: 27 residues within 4Å: Chain A: V.9, G.10, G.12, M.13, I.14, F.33, D.34, I.35, V.36, M.39, Y.66, T.78, A.79, G.80, F.81, T.82, I.104, E.107, V.124, T.125, N.126, V.128, L.149, L.153, H.181, P.234, P.238 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.14, A:V.128, A:L.149, A:P.238 Hydrogen bonds: A:G.12, A:M.13, A:I.14, A:I.35, A:Y.66, A:Y.66, A:G.80, A:F.81, A:N.126, A:N.126 Water bridges: A:G.15, A:T.82, A:T.82, A:T.82, A:T.82 AP0.2: 27 residues within 4Å: Chain B: V.9, G.10, G.12, M.13, I.14, F.33, D.34, I.35, V.36, M.39, Y.66, T.78, A.79, G.80, F.81, T.82, I.104, E.107, V.124, T.125, N.126, V.128, L.149, L.153, H.181, P.234, P.238 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:I.14, B:V.128, B:L.149, B:P.238 Hydrogen bonds: B:G.12, B:M.13, B:I.14, B:I.35, B:Y.66, B:Y.66, B:G.80, B:F.81, B:N.126, B:N.126 Water bridges: B:G.15, B:T.82, B:T.82, B:T.82, B:T.82 AP0.3: 27 residues within 4Å: Chain C: V.9, G.10, G.12, M.13, I.14, F.33, D.34, I.35, V.36, M.39, Y.66, T.78, A.79, G.80, F.81, T.82, I.104, E.107, V.124, T.125, N.126, V.128, L.149, L.153, H.181, P.234, P.238 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:I.14, C:V.128, C:L.149, C:P.238 Hydrogen bonds: C:G.12, C:M.13, C:I.14, C:I.35, C:Y.66, C:G.80, C:F.81, C:T.82, C:E.107, C:N.126, C:N.126 Water bridges: C:G.15, C:T.82, C:T.82 AP0.4: 27 residues within 4Å: Chain D: V.9, G.10, G.12, M.13, I.14, F.33, D.34, I.35, V.36, M.39, Y.66, T.78, A.79, G.80, F.81, T.82, I.104, E.107, V.124, T.125, N.126, V.128, L.149, L.153, H.181, P.234, P.238 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.14, D:V.128, D:L.149, D:P.238 Hydrogen bonds: D:G.12, D:M.13, D:I.14, D:I.35, D:Y.66, D:G.80, D:F.81, D:T.82, D:E.107, D:N.126, D:N.126 Water bridges: D:G.15, D:T.82, D:T.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structure of Lactate Dehydrogenase from Plasmodium vivax: Complexes with NADH and APADH. Biochemistry (2005)

Release Date

2006-01-10

Peptides

L-lactate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

L-lactate dehydrogenase

Related Entries With Identical Sequence