SMTL ID : 2ac7.1

Crystal structure of Adenosine Phosphorylase from Bacillus cereus with adenosine bound in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.19, G.20, R.87, V.88, G.89, T.90 Chain B: R.43 Ligands: ADN.2 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain A Water bridges: B:R.43, A:R.24, A:R.24, A:R.24 Salt bridges: B:R.43, A:R.87 Hydrogen bonds: A:G.20, A:D.21, A:T.90, A:E.181 SO4.3: 8 residues within 4Å: Chain A: R.43 Chain B: P.19, G.20, R.87, V.88, G.89, T.90 Ligands: ADN.4 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Water bridges: A:R.43 Salt bridges: A:R.43, B:R.87 Hydrogen bonds: B:G.20, B:D.21, B:V.88, B:T.90 SO4.5: 8 residues within 4Å: Chain C: P.19, G.20, R.87, V.88, G.89, T.90 Chain D: R.43 Ligands: ADN.6 10 PLIP interactions: 2 interactions with chain D, 8 interactions with chain C Water bridges: D:R.43, C:R.24, C:R.24, C:R.24 Salt bridges: D:R.43, C:R.87 Hydrogen bonds: C:G.20, C:D.21, C:T.90, C:E.181 SO4.7: 8 residues within 4Å: Chain C: R.43 Chain D: P.19, G.20, R.87, V.88, G.89, T.90 Ligands: ADN.8 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:G.20, D:D.21, D:V.88, D:T.90 Salt bridges: D:R.87, C:R.43 Water bridges: C:R.43 SO4.9: 8 residues within 4Å: Chain E: P.19, G.20, R.87, V.88, G.89, T.90 Chain F: R.43 Ligands: ADN.10 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:G.20, E:D.21, E:T.90, E:E.181 Water bridges: E:R.24, E:R.24, E:R.24, F:R.43 Salt bridges: E:R.87, F:R.43 SO4.11: 8 residues within 4Å: Chain E: R.43 Chain F: P.19, G.20, R.87, V.88, G.89, T.90 Ligands: ADN.12 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:G.20, F:D.21, F:V.88, F:T.90 Salt bridges: F:R.87, E:R.43 Water bridges: E:R.43

6 x ADN: ADENOSINE(Non-covalent)

ADN.2: 14 residues within 4Å: Chain A: M.64, R.87, T.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, D.204 Chain B: H.4, R.43 Ligands: SO4.1 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:H.4, B:R.43, A:R.87, A:T.90, A:M.180, A:E.181, A:D.204 ADN.4: 14 residues within 4Å: Chain A: H.4, R.43 Chain B: M.64, R.87, T.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, D.204 Ligands: SO4.3 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.87, B:M.180, B:E.181, B:D.204, A:H.4, A:R.43 Water bridges: B:T.90, B:T.90 ADN.6: 14 residues within 4Å: Chain C: M.64, R.87, T.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, D.204 Chain D: H.4, R.43 Ligands: SO4.5 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.87, C:T.90, C:M.180, C:E.181, C:D.204, D:H.4, D:R.43 ADN.8: 14 residues within 4Å: Chain C: H.4, R.43 Chain D: M.64, R.87, T.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, D.204 Ligands: SO4.7 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:R.87, D:M.180, D:E.181, D:D.204, C:H.4, C:R.43 Water bridges: D:T.90, D:T.90 ADN.10: 14 residues within 4Å: Chain E: M.64, R.87, T.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, D.204 Chain F: H.4, R.43 Ligands: SO4.9 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:R.87, E:T.90, E:M.180, E:E.181, E:D.204, F:H.4, F:R.43 ADN.12: 14 residues within 4Å: Chain E: H.4, R.43 Chain F: M.64, R.87, T.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, D.204 Ligands: SO4.11 8 PLIP interactions: 6 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:R.87, F:M.180, F:E.181, F:D.204, E:H.4, E:R.43 Water bridges: F:T.90, F:T.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rinaldo-Matthis, A. et al., Adenosine Phosphorylase from Bacillus cereus. To be Published

Release Date

2006-07-18

Peptides

Purine nucleoside phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Purine nucleoside phosphorylase

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