SMTL ID : 2aia.1

S.pneumoniae PDF complexed with SB-543668

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.77, C.130, H.173, H.177 Ligands: SB8.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.130, A:H.173, A:H.177

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.118, R.146 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.117, A:V.119, A:R.146, A:R.146 Salt bridges: A:R.146

1 x SB8: 2-(3-BENZOYLPHENOXY)ETHYL(HYDROXY)FORMAMIDE(Non-covalent)

SB8.3: 15 residues within 4Å: Chain A: V.71, G.72, Q.77, L.124, G.127, E.128, G.129, C.130, L.131, Y.166, V.170, H.173, E.174, H.177 Ligands: NI.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.71, A:L.124, A:E.128, A:Y.166, A:V.170, A:H.173 Hydrogen bonds: A:Q.77, A:G.129, A:L.131 pi-Stacking: A:H.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.J. et al., Structural Variation and inhibitor binding in polypeptide deformylase from four different bacterial species. Protein Sci. (2003)

Release Date

2005-09-06

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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