SMTL ID : 2aik.1

Formylglycine generating enzyme C336S mutant covalently bound to substrate peptide LCTPSRA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x LEU- CYS- THR- PRO- SER- ARG- ALA: LCTPSRA peptide from Arylsulfatase A(Non-covalent)

LEU-CYS-THR-PRO-SER-ARG-ALA.1: 19 residues within 4Å: Chain A: A.64, F.67, D.69, F.71, A.91, W.95, W.214, K.244, Y.255, C.256, R.258, N.267, T.268, D.270, S.271, S.272, A.273, N.275 Ligands: CL.5 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.71, A:F.71, A:A.91, A:A.91, A:W.95, A:A.273 Hydrogen bonds: A:D.69, A:D.69, A:W.214, A:N.267, A:T.268, A:S.271, A:S.271, A:N.275 Water bridges: A:D.241, A:K.244, A:K.244, A:K.244, A:R.258, A:S.265, A:S.265, A:S.272, A:S.272 Salt bridges: A:D.69

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: T.49, E.52, K.53, N.56 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: E.45, N.208, I.209, G.211, A.213, E.215 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.45, A:N.208, A:G.211, A:A.213, A:E.215, H2O.2 CA.4: 4 residues within 4Å: Chain A: N.174, I.175, D.188, F.190 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.175, A:D.188, A:F.190, H2O.1, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 7 residues within 4Å: Chain A: W.214, S.248, M.250, S.251, C.256, N.275 Ligands: LEU-CYS-THR-PRO-SER-ARG-ALA.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roeser, D. et al., A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2005-12-13

Peptides

Sulfatase modifying factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Sulfatase modifying factor 1

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