SMTL ID : 2aj7.1 (2 other biounits)

Crystal structure of a putative contractile protein (bh3618) from bacillus halodurans at 1.67 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.75, F.77, V.103, A.104, I.105, F.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.103, A:I.105 EDO.2: 5 residues within 4Å: Chain A: F.80, E.82, Y.83, L.122, Y.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.149 Water bridges: A:E.82, A:Y.83, A:Q.149 EDO.3: 4 residues within 4Å: Chain A: D.43, E.44, K.65, T.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.43, A:D.43 Water bridges: A:D.43 EDO.4: 7 residues within 4Å: Chain A: P.39, L.108, N.121, A.124, Q.137, V.139, R.147 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.137 EDO.12: 6 residues within 4Å: Chain B: H.11, H.12, M.13, A.27, E.28, D.29 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.12, B:E.28, B:D.29, B:D.29 EDO.13: 5 residues within 4Å: Chain B: A.54, G.55, T.56, Y.59 Ligands: FMT.21 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.55, B:T.56 Water bridges: B:Y.59 EDO.14: 7 residues within 4Å: Chain B: L.87, I.92, I.97, N.99, E.100, V.103 Ligands: FMT.20 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.98 EDO.15: 6 residues within 4Å: Chain B: N.75, F.77, V.103, A.104, I.105, F.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.105 Water bridges: B:Y.59 EDO.16: 8 residues within 4Å: Chain A: Y.20, S.21 Chain B: E.25, V.26, R.30, L.50, P.51 Ligands: EDO.18 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.25, B:R.30, B:R.30 EDO.17: 5 residues within 4Å: Chain B: N.121, A.124, Q.137, V.139, R.147 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.121, B:Q.137, B:R.147 EDO.18: 8 residues within 4Å: Chain A: Y.20, S.21 Chain B: S.21, L.24, L.50, P.51 Ligands: EDO.16, EDO.19 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.21, B:S.21, A:Y.20 EDO.19: 8 residues within 4Å: Chain A: F.52 Chain B: Y.20, S.21, L.50, P.51, F.52, T.60 Ligands: EDO.18 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.50, A:F.52

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 3 residues within 4Å: Chain A: T.143, A.144, Y.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.144 Water bridges: A:D.142, A:Y.145 FMT.6: 6 residues within 4Å: Chain A: G.55, T.56, P.57, S.78 Chain B: F.115 Ligands: FMT.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.56, A:S.78 Water bridges: A:N.75 FMT.7: 5 residues within 4Å: Chain A: A.54, G.55, T.56, Y.59 Ligands: FMT.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.55 Water bridges: A:A.53, A:Y.59 FMT.8: 4 residues within 4Å: Chain A: L.69, A.70, F.71 Ligands: FMT.9 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.19, A:K.19 FMT.9: 6 residues within 4Å: Chain A: A.70, F.71, I.72, L.108, L.109 Ligands: FMT.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.72, A:L.109, A:L.109 FMT.20: 3 residues within 4Å: Chain B: T.98, N.99 Ligands: EDO.14 No protein-ligand interaction detected (PLIP) FMT.21: 6 residues within 4Å: Chain A: F.115 Chain B: G.55, T.56, P.57, S.78 Ligands: EDO.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.56, B:S.78 Water bridges: B:N.75

1 x NI: NICKEL (II) ION(Non-covalent)

NI.10: 2 residues within 4Å: Chain B: H.10, H.12 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.10, B:H.12

1 x K: POTASSIUM ION(Non-covalent)

K.11: 2 residues within 4Å: Chain B: D.43, K.65 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (10176242) from Bacillus halodurans at 1.67 A resolution. To be published

Release Date

2005-11-15

Peptides

hypothetical protein BH3618: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

hypothetical protein BH3618

Related Entries With Identical Sequence