- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x 0QG: 3-methyl-L-valyl-L-prolyl-L-isoleucine(Covalent)
0QG.10: 11 residues within 4Å:- Chain A: R.87, E.167, E.168, Y.509, S.592, Y.593, V.618, Y.624, Y.628, N.672, H.702
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:Y.509, A:Y.593, A:V.618, A:Y.628
- Hydrogen bonds: A:R.87, A:E.167, A:Y.509, A:S.592, A:Y.593, A:N.672
- Salt bridges: A:R.87, A:H.702
0QG.16: 13 residues within 4Å:- Chain B: R.87, E.167, E.168, Y.509, W.591, S.592, Y.593, V.618, Y.624, Y.628, N.672, V.673, H.702
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:Y.509, B:V.618, B:Y.628, B:V.673
- Hydrogen bonds: B:R.87, B:E.167, B:S.592, B:Y.593, B:Y.624, B:N.672, B:H.702
- Salt bridges: B:R.87, B:H.702
0QG.22: 13 residues within 4Å:- Chain C: R.87, E.167, E.168, Y.509, W.591, S.592, Y.593, V.618, Y.624, Y.628, N.672, V.673, H.702
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:Y.509, C:Y.593, C:V.618, C:Y.628, C:V.673
- Hydrogen bonds: C:R.87, C:E.167, C:E.167, C:Y.509, C:S.592, C:Y.593, C:Y.624, C:N.672
- Salt bridges: C:R.87, C:H.702
0QG.29: 12 residues within 4Å:- Chain D: R.87, E.167, E.168, Y.509, S.592, Y.593, V.618, Y.624, Y.628, N.672, V.673, H.702
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:Y.509, D:Y.593, D:V.618, D:V.673
- Hydrogen bonds: D:R.87, D:E.167, D:E.167, D:S.592, D:Y.593, D:Y.624, D:N.672
- Salt bridges: D:R.87, D:H.702
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.11: 5 residues within 4Å:- Chain A: L.40, N.42, N.47, S.48, S.49
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.40
- Hydrogen bonds: A:N.47
NAG.12: 4 residues within 4Å:- Chain A: E.35, N.36, N.37, N.54
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.37
NAG.13: 3 residues within 4Å:- Chain A: N.241
- Chain C: Y.247, V.250
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Water bridges: C:Y.247, C:Y.247
- Hydrogen bonds: A:N.241
NAG.14: 5 residues within 4Å:- Chain A: N.283, I.310, S.311, T.312, D.640
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.310
- Hydrogen bonds: A:N.283, A:D.640
NAG.17: 4 residues within 4Å:- Chain B: L.40, N.47, S.48, S.49
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.47
NAG.18: 4 residues within 4Å:- Chain B: I.156, N.191, T.193, E.194
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.156
- Hydrogen bonds: B:N.191, B:E.194, B:E.194
- Water bridges: B:K.229
NAG.19: 6 residues within 4Å:- Chain B: P.240, N.241
- Chain D: Y.247, V.250, L.256, R.298
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain B- Water bridges: D:Y.247, D:V.250
- Hydrophobic interactions: B:P.240
- Hydrogen bonds: B:N.241
NAG.20: 5 residues within 4Å:- Chain B: N.283, I.310, S.311, T.312, R.558
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.310, B:T.312
- Hydrogen bonds: B:N.283
- Water bridges: B:N.283, B:R.558
NAG.23: 5 residues within 4Å:- Chain C: L.40, Y.45, N.47, S.48, S.49
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.47, C:S.49
NAG.24: 4 residues within 4Å:- Chain C: E.35, N.36, N.37, N.54
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.36, C:N.37
NAG.25: 5 residues within 4Å:- Chain C: T.150, I.156, N.191, T.193, E.194
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:T.150, C:I.156
- Hydrogen bonds: C:N.191, C:T.193, C:E.194
- Water bridges: C:Q.189, C:K.229, C:K.229
NAG.26: 3 residues within 4Å:- Chain A: Y.247, V.250
- Chain C: N.241
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:N.241, A:Y.247
NAG.27: 4 residues within 4Å:- Chain C: A.281, N.283, S.311, R.558
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.283, C:R.558, C:D.640
NAG.30: 3 residues within 4Å:- Chain D: N.47, S.48, S.49
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.47
NAG.31: 1 residues within 4Å:- Chain D: N.241
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Water bridges: B:Y.247, B:Y.247, D:N.241, D:N.241, D:N.241
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.15: 7 residues within 4Å:- Chain A: A.322, E.323, H.325, I.336, I.367, G.368, I.369
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.323, A:I.369
- Water bridges: A:I.369
- Salt bridges: A:H.325
SO4.21: 6 residues within 4Å:- Chain B: A.322, E.323, H.325, I.336, G.368, I.369
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.323, B:I.369
- Salt bridges: B:H.325
SO4.28: 6 residues within 4Å:- Chain C: A.322, E.323, H.325, I.367, G.368, I.369
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:E.323, C:I.369
- Water bridges: C:E.323, C:E.323
- Salt bridges: C:H.325
SO4.32: 7 residues within 4Å:- Chain D: A.322, E.323, H.325, I.336, I.367, G.368, I.369
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.323, D:I.369
- Water bridges: D:E.323
- Salt bridges: D:H.325
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Engel, M. et al., Rigidity and flexibility of dipeptidyl peptidase IV: crystal structures of and docking experiments with DPIV. J.Mol.Biol. (2006)
- Release Date
- 2006-02-28
- Peptides
- Dipeptidyl peptidase 4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x 0QG: 3-methyl-L-valyl-L-prolyl-L-isoleucine(Covalent)
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Engel, M. et al., Rigidity and flexibility of dipeptidyl peptidase IV: crystal structures of and docking experiments with DPIV. J.Mol.Biol. (2006)
- Release Date
- 2006-02-28
- Peptides
- Dipeptidyl peptidase 4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D