- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 5 residues within 4Å:- Chain A: L.40, N.42, N.47, S.48, S.49
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.47
NAG.7: 4 residues within 4Å:- Chain A: E.35, N.36, N.37, N.54
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.36, A:N.54
NAG.8: 6 residues within 4Å:- Chain A: I.156, Q.189, N.191, T.193, E.194, K.229
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.156
- Hydrogen bonds: A:N.191, A:T.193, A:E.194
- Water bridges: A:K.229
NAG.9: 1 residues within 4Å:- Chain A: N.241
No protein-ligand interaction detected (PLIP)NAG.10: 6 residues within 4Å:- Chain A: A.281, N.283, S.311, T.312, R.558, D.640
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.283, A:R.558, A:D.640
NAG.14: 4 residues within 4Å:- Chain B: L.40, N.42, N.47, S.49
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.40, B:N.47
NAG.15: 1 residues within 4Å:- Chain B: N.241
No protein-ligand interaction detected (PLIP)- 2 x 007: 1-METHYLAMINE-1-BENZYL-CYCLOPENTANE(Non-covalent)
007.11: 13 residues within 4Å:- Chain A: R.87, E.167, E.168, Y.509, S.592, Y.593, V.618, Y.624, Y.628, N.672, V.673, H.702
- Ligands: SO4.13
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.618, A:Y.628, A:V.673
- Hydrogen bonds: A:E.167, A:E.167, A:Y.624
- pi-Stacking: A:Y.624, A:Y.628
007.16: 12 residues within 4Å:- Chain B: R.87, E.167, E.168, F.319, Y.509, S.592, V.618, Y.624, Y.628, V.673, H.702
- Ligands: SO4.18
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.319, B:V.618, B:Y.628, B:V.673
- Hydrogen bonds: B:E.167, B:E.167, B:Y.624
- pi-Stacking: B:Y.624, B:Y.628
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.12: 5 residues within 4Å:- Chain A: A.322, E.323, H.325, G.368, I.369
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.323, A:I.369
- Water bridges: A:E.323
- Salt bridges: A:H.325
SO4.13: 5 residues within 4Å:- Chain A: R.87, W.591, S.592, H.702
- Ligands: 007.11
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.592, A:S.592
- Salt bridges: A:R.87, A:H.702
SO4.17: 6 residues within 4Å:- Chain B: A.322, E.323, H.325, I.336, G.368, I.369
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.323, B:I.369, B:I.369
- Water bridges: B:E.323, B:H.325
- Salt bridges: B:H.325
SO4.18: 5 residues within 4Å:- Chain B: R.87, W.591, S.592, H.702
- Ligands: 007.16
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.592
- Salt bridges: B:R.87, B:H.702
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nordhoff, S. et al., The reversed binding of beta-phenethylamine inhibitors of DPP-IV: X-ray structures and properties of novel fragment and elaborated inhibitors. Bioorg. Med. Chem. Lett. (2006)
- Release Date
- 2006-01-23
- Peptides
- DIPEPTIDYL PEPTIDASE IV: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x 007: 1-METHYLAMINE-1-BENZYL-CYCLOPENTANE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nordhoff, S. et al., The reversed binding of beta-phenethylamine inhibitors of DPP-IV: X-ray structures and properties of novel fragment and elaborated inhibitors. Bioorg. Med. Chem. Lett. (2006)
- Release Date
- 2006-01-23
- Peptides
- DIPEPTIDYL PEPTIDASE IV: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D