SMTL ID : 2alg.6 (5 other biounits)

Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.3, C.4, G.5 Chain B: P.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.3, A:C.4, A:G.5, A:Q.6 SO4.4: 4 residues within 4Å: Chain A: P.60 Chain B: T.3, C.4, G.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.4, B:G.5, B:Q.6

2 x DAO: LAURIC ACID(Non-covalent)

DAO.2: 8 residues within 4Å: Chain A: S.8, S.9, L.11, I.15, V.18, V.59, I.82 Chain B: R.19 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.11, A:I.15, A:V.18, A:V.59, A:I.82 Salt bridges: B:R.19 DAO.5: 8 residues within 4Å: Chain A: R.19 Chain B: S.8, S.9, L.11, I.15, V.18, V.59, I.82 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Salt bridges: A:R.19 Hydrophobic interactions: B:L.11, B:I.15, B:V.18, B:V.59, B:I.82

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 3 residues within 4Å: Chain A: M.1, Q.6, L.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.6 P6G.6: 3 residues within 4Å: Chain B: M.1, Q.6, L.38 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pasquato, N. et al., Crystal Structure of Peach Pru p 3, the Prototypic Member of the Family of Plant Non-specific Lipid Transfer Protein Pan-allergens. J.Mol.Biol. (2006)

Release Date

2005-11-29

Peptides

non-specific lipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

non-specific lipid transfer protein

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