SMTL ID : 2b5s.4 (4 other biounits)

Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 12 residues within 4Å: Chain A: N.36, A.39, R.45, A.48, C.49, K.53, S.56, K.81, I.82, S.83, A.84 Ligands: HP6.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.53, A:I.82 Hydrogen bonds: A:N.36, A:R.45 Salt bridges: A:R.45 DAO.4: 8 residues within 4Å: Chain A: S.9 Chain B: S.8, S.9, L.11, A.12, I.15, V.18, I.82 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:S.9, B:S.8 Hydrophobic interactions: B:L.11, B:I.15, B:V.18, B:I.82

1 x HP6: HEPTANE(Non-covalent)

HP6.2: 7 residues within 4Å: Chain A: L.11, I.32, V.35, L.52, A.67, I.78 Ligands: DAO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.11, A:I.32, A:V.35, A:L.52, A:I.78

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: A.27, N.30 Chain B: T.3, G.5, Q.6 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.30, B:G.5, B:Q.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pasquato, N. et al., Crystal Structure of Peach Pru p 3, the Prototypic Member of the Family of Plant Non-specific Lipid Transfer Protein Pan-allergens. J.Mol.Biol. (2006)

Release Date

2005-11-29

Peptides

Non-specific lipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-specific lipid transfer protein

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