SMTL ID : 2aq8.1

Crystal structure of wild-type of Enoyl-ACP(CoA) reductase from Mycobacterium tuberculosis in complex with NADH.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 23 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196 Water bridges: A:A.22, A:F.41, A:F.41, A:F.41, A:I.95 pi-Stacking: A:F.41 NAI.3: 23 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:I.21, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196 Water bridges: B:A.22, B:F.41, B:F.41, B:F.41, B:I.95 pi-Stacking: B:F.41 NAI.5: 23 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:S.20, C:I.21, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194, C:T.196, C:T.196 Water bridges: C:A.22, C:F.41, C:F.41, C:F.41, C:I.95 pi-Stacking: C:F.41 NAI.7: 23 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:I.21, D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196, D:T.196 Water bridges: D:A.22, D:F.41, D:F.41, D:F.41, D:I.95 pi-Stacking: D:F.41

4 x LYS: LYSINE(Covalent)

LYS.2: 3 residues within 4Å: Chain A: R.177, E.178, K.181 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:K.181, A:K.181 Hydrogen bonds: A:E.178, A:K.181 LYS.4: 3 residues within 4Å: Chain B: R.177, E.178, K.181 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:K.181, B:K.181 Hydrogen bonds: B:E.178, B:K.181 LYS.6: 3 residues within 4Å: Chain C: R.177, E.178, K.181 4 PLIP interactions: 4 interactions with chain C, Hydrophobic interactions: C:K.181, C:K.181 Hydrogen bonds: C:E.178, C:K.181 LYS.8: 3 residues within 4Å: Chain D: R.177, E.178, K.181 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:K.181, D:K.181 Hydrogen bonds: D:E.178, D:K.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliveira, J.S. et al., Crystallographic and Pre-steady-state Kinetics Studies on Binding of NADH to Wild-type and Isoniazid-resistant Enoyl-ACP(CoA) Reductase Enzymes from Mycobacterium tuberculosis. J.Mol.Biol. (2006)

Release Date

2006-05-23

Peptides

Enoyl-Acyl-carrier-protein reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Enoyl-Acyl-carrier-protein reductase

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