SMTL ID : 2aq9.1

Structure of E. coli LpxA with a bound peptide that is competitive with acyl-ACP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-3-3-mer

Ligands

15 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: V.71, R.100 Ligands: PO4.2 Ligand excluded by PLIP PO4.2: 5 residues within 4Å: Chain A: E.15, P.34, N.51, G.52 Ligands: PO4.1 Ligand excluded by PLIP PO4.3: 2 residues within 4Å: Chain A: K.76, Q.104 Ligand excluded by PLIP PO4.4: 6 residues within 4Å: Chain A: D.114, L.116, R.132, C.133, I.134 Chain E: L.75 Ligand excluded by PLIP PO4.27: 7 residues within 4Å: Chain A: Q.73, D.74, L.75, K.76, Q.161 Chain B: L.6, P.8 Ligand excluded by PLIP PO4.28: 3 residues within 4Å: Chain C: V.71, R.100 Ligands: PO4.29 Ligand excluded by PLIP PO4.29: 5 residues within 4Å: Chain C: E.15, P.34, N.51, G.52 Ligands: PO4.28 Ligand excluded by PLIP PO4.30: 2 residues within 4Å: Chain C: K.76, Q.104 Ligand excluded by PLIP PO4.31: 6 residues within 4Å: Chain A: L.75 Chain C: D.114, L.116, R.132, C.133, I.134 Ligand excluded by PLIP PO4.54: 7 residues within 4Å: Chain C: Q.73, D.74, L.75, K.76, Q.161 Chain D: L.6, P.8 Ligand excluded by PLIP PO4.55: 3 residues within 4Å: Chain E: V.71, R.100 Ligands: PO4.56 Ligand excluded by PLIP PO4.56: 5 residues within 4Å: Chain E: E.15, P.34, N.51, G.52 Ligands: PO4.55 Ligand excluded by PLIP PO4.57: 2 residues within 4Å: Chain E: K.76, Q.104 Ligand excluded by PLIP PO4.58: 6 residues within 4Å: Chain C: L.75 Chain E: D.114, L.116, R.132, C.133, I.134 Ligand excluded by PLIP PO4.81: 7 residues within 4Å: Chain E: Q.73, D.74, L.75, K.76, Q.161 Chain F: L.6, P.8 Ligand excluded by PLIP

66 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 4 residues within 4Å: Chain A: I.13, V.14, E.15, E.16 Ligand excluded by PLIP DMS.6: 5 residues within 4Å: Chain A: K.55, I.56, G.57, I.86 Ligands: DMS.9 Ligand excluded by PLIP DMS.7: 6 residues within 4Å: Chain A: G.17, S.19, P.34, H.35, V.36, E.37 Ligand excluded by PLIP DMS.8: 6 residues within 4Å: Chain A: N.23, H.25, G.41, V.43 Ligands: DMS.12, DMS.24 Ligand excluded by PLIP DMS.9: 3 residues within 4Å: Chain A: D.88, S.113 Ligands: DMS.6 Ligand excluded by PLIP DMS.10: 3 residues within 4Å: Chain A: D.148, R.255 Ligands: DMS.15 Ligand excluded by PLIP DMS.11: 1 residues within 4Å: Chain A: H.25 Ligand excluded by PLIP DMS.12: 6 residues within 4Å: Chain A: G.41, V.43, D.59, N.60, R.91 Ligands: DMS.8 Ligand excluded by PLIP DMS.13: 6 residues within 4Å: Chain A: H.144, S.146, F.162, R.255, T.257 Ligands: DMS.16 Ligand excluded by PLIP DMS.14: 4 residues within 4Å: Chain A: A.6, F.7, V.8 Ligands: DMS.17 Ligand excluded by PLIP DMS.15: 4 residues within 4Å: Chain A: D.148, D.149, A.167 Ligands: DMS.10 Ligand excluded by PLIP DMS.16: 7 residues within 4Å: Chain A: D.126, C.127, T.128, H.144, V.145, S.146 Ligands: DMS.13 Ligand excluded by PLIP DMS.17: 5 residues within 4Å: Chain A: K.4, S.5, A.6, F.7 Ligands: DMS.14 Ligand excluded by PLIP DMS.18: 4 residues within 4Å: Chain A: M.1, D.3, S.19, I.20 Ligand excluded by PLIP DMS.19: 2 residues within 4Å: Chain A: D.3, K.4 Ligand excluded by PLIP DMS.20: 3 residues within 4Å: Chain A: P.28 Chain E: I.13, E.15 Ligand excluded by PLIP DMS.21: 3 residues within 4Å: Chain A: N.131, R.132, F.150 Ligand excluded by PLIP DMS.22: 3 residues within 4Å: Chain A: P.194, Y.219, Y.223 Ligand excluded by PLIP DMS.23: 4 residues within 4Å: Chain A: R.205, G.206, F.207, E.245 Ligand excluded by PLIP DMS.24: 4 residues within 4Å: Chain A: H.25, V.43, K.45 Ligands: DMS.8 Ligand excluded by PLIP DMS.25: 5 residues within 4Å: Chain A: R.91, R.93, L.116 Chain E: N.72, Q.73 Ligand excluded by PLIP DMS.26: 3 residues within 4Å: Chain A: K.203, F.207, R.209 Ligand excluded by PLIP DMS.32: 4 residues within 4Å: Chain C: I.13, V.14, E.15, E.16 Ligand excluded by PLIP DMS.33: 5 residues within 4Å: Chain C: K.55, I.56, G.57, I.86 Ligands: DMS.36 Ligand excluded by PLIP DMS.34: 6 residues within 4Å: Chain C: G.17, S.19, P.34, H.35, V.36, E.37 Ligand excluded by PLIP DMS.35: 6 residues within 4Å: Chain C: N.23, H.25, G.41, V.43 Ligands: DMS.39, DMS.51 Ligand excluded by PLIP DMS.36: 3 residues within 4Å: Chain C: D.88, S.113 Ligands: DMS.33 Ligand excluded by PLIP DMS.37: 3 residues within 4Å: Chain C: D.148, R.255 Ligands: DMS.42 Ligand excluded by PLIP DMS.38: 1 residues within 4Å: Chain C: H.25 Ligand excluded by PLIP DMS.39: 6 residues within 4Å: Chain C: G.41, V.43, D.59, N.60, R.91 Ligands: DMS.35 Ligand excluded by PLIP DMS.40: 6 residues within 4Å: Chain C: H.144, S.146, F.162, R.255, T.257 Ligands: DMS.43 Ligand excluded by PLIP DMS.41: 4 residues within 4Å: Chain C: A.6, F.7, V.8 Ligands: DMS.44 Ligand excluded by PLIP DMS.42: 4 residues within 4Å: Chain C: D.148, D.149, A.167 Ligands: DMS.37 Ligand excluded by PLIP DMS.43: 7 residues within 4Å: Chain C: D.126, C.127, T.128, H.144, V.145, S.146 Ligands: DMS.40 Ligand excluded by PLIP DMS.44: 5 residues within 4Å: Chain C: K.4, S.5, A.6, F.7 Ligands: DMS.41 Ligand excluded by PLIP DMS.45: 4 residues within 4Å: Chain C: M.1, D.3, S.19, I.20 Ligand excluded by PLIP DMS.46: 2 residues within 4Å: Chain C: D.3, K.4 Ligand excluded by PLIP DMS.47: 3 residues within 4Å: Chain A: I.13, E.15 Chain C: P.28 Ligand excluded by PLIP DMS.48: 3 residues within 4Å: Chain C: N.131, R.132, F.150 Ligand excluded by PLIP DMS.49: 3 residues within 4Å: Chain C: P.194, Y.219, Y.223 Ligand excluded by PLIP DMS.50: 4 residues within 4Å: Chain C: R.205, G.206, F.207, E.245 Ligand excluded by PLIP DMS.51: 4 residues within 4Å: Chain C: H.25, V.43, K.45 Ligands: DMS.35 Ligand excluded by PLIP DMS.52: 5 residues within 4Å: Chain A: N.72, Q.73 Chain C: R.91, R.93, L.116 Ligand excluded by PLIP DMS.53: 3 residues within 4Å: Chain C: K.203, F.207, R.209 Ligand excluded by PLIP DMS.59: 4 residues within 4Å: Chain E: I.13, V.14, E.15, E.16 Ligand excluded by PLIP DMS.60: 5 residues within 4Å: Chain E: K.55, I.56, G.57, I.86 Ligands: DMS.63 Ligand excluded by PLIP DMS.61: 6 residues within 4Å: Chain E: G.17, S.19, P.34, H.35, V.36, E.37 Ligand excluded by PLIP DMS.62: 6 residues within 4Å: Chain E: N.23, H.25, G.41, V.43 Ligands: DMS.66, DMS.78 Ligand excluded by PLIP DMS.63: 3 residues within 4Å: Chain E: D.88, S.113 Ligands: DMS.60 Ligand excluded by PLIP DMS.64: 3 residues within 4Å: Chain E: D.148, R.255 Ligands: DMS.69 Ligand excluded by PLIP DMS.65: 1 residues within 4Å: Chain E: H.25 Ligand excluded by PLIP DMS.66: 6 residues within 4Å: Chain E: G.41, V.43, D.59, N.60, R.91 Ligands: DMS.62 Ligand excluded by PLIP DMS.67: 6 residues within 4Å: Chain E: H.144, S.146, F.162, R.255, T.257 Ligands: DMS.70 Ligand excluded by PLIP DMS.68: 4 residues within 4Å: Chain E: A.6, F.7, V.8 Ligands: DMS.71 Ligand excluded by PLIP DMS.69: 4 residues within 4Å: Chain E: D.148, D.149, A.167 Ligands: DMS.64 Ligand excluded by PLIP DMS.70: 7 residues within 4Å: Chain E: D.126, C.127, T.128, H.144, V.145, S.146 Ligands: DMS.67 Ligand excluded by PLIP DMS.71: 5 residues within 4Å: Chain E: K.4, S.5, A.6, F.7 Ligands: DMS.68 Ligand excluded by PLIP DMS.72: 4 residues within 4Å: Chain E: M.1, D.3, S.19, I.20 Ligand excluded by PLIP DMS.73: 2 residues within 4Å: Chain E: D.3, K.4 Ligand excluded by PLIP DMS.74: 3 residues within 4Å: Chain C: I.13, E.15 Chain E: P.28 Ligand excluded by PLIP DMS.75: 3 residues within 4Å: Chain E: N.131, R.132, F.150 Ligand excluded by PLIP DMS.76: 3 residues within 4Å: Chain E: P.194, Y.219, Y.223 Ligand excluded by PLIP DMS.77: 4 residues within 4Å: Chain E: R.205, G.206, F.207, E.245 Ligand excluded by PLIP DMS.78: 4 residues within 4Å: Chain E: H.25, V.43, K.45 Ligands: DMS.62 Ligand excluded by PLIP DMS.79: 5 residues within 4Å: Chain C: N.72, Q.73 Chain E: R.91, R.93, L.116 Ligand excluded by PLIP DMS.80: 3 residues within 4Å: Chain E: K.203, F.207, R.209 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, A.H. et al., Structure of UDP-N-acetylglucosamine acyltransferase with a bound antibacterial pentadecapeptide. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-06-27

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ACE
peptide inhibitor: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
X

D
X

F
X

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

peptide inhibitor

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