SMTL ID : 2as3.1

cytochrome c peroxidase in complex with phenol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: H.175, L.177, G.178, K.179 Ligands: IPH.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.177, H2O.1

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 23 residues within 4Å: Chain A: P.44, V.45, R.48, W.51, P.145, D.146, A.147, F.158, L.171, M.172, A.174, H.175, L.177, G.178, K.179, T.180, H.181, N.184, S.185, L.232, T.234, F.266 Ligands: IPH.3 29 PLIP interactions: 28 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.48, A:W.51, A:W.51, A:W.51, A:P.145, A:A.147, A:F.158, A:L.171, A:A.174, A:L.177, A:T.180, A:L.232, A:F.266 Hydrogen bonds: A:K.179, A:H.181, A:N.184 Water bridges: A:D.37, A:D.37, A:D.37, A:V.45, A:H.181 Salt bridges: A:R.48, A:H.181, A:H.181 pi-Stacking: A:W.51 pi-Cation interactions: A:R.48, A:H.175 Metal complexes: A:H.175, H2O.11

1 x IPH: PHENOL(Non-covalent)

IPH.3: 12 residues within 4Å: Chain A: H.175, L.177, G.178, K.179, T.180, P.190, G.191, M.230, L.232, D.235 Ligands: K.1, HEM.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.180, A:L.232 Hydrogen bonds: A:T.180, A:G.191 Water bridges: A:G.192, A:N.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brenk, R. et al., Probing molecular docking in a charged model binding site. J.Mol.Biol. (2006)

Release Date

2006-04-11

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase, mitochondrial

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