SMTL ID : 2y5a.1

Cytochrome c peroxidase (CCP) W191G bound to 3-aminopyridine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: P.44, V.45, R.48, W.51, P.145, D.146, A.147, F.158, L.171, M.172, A.174, H.175, L.177, G.178, K.179, T.180, H.181, N.184, S.185, L.232, T.234, F.262 Ligands: 3AP.2 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:R.48, A:W.51, A:W.51, A:W.51, A:P.145, A:A.147, A:F.158, A:L.171, A:A.174, A:L.177, A:T.180, A:L.232, A:F.262 Hydrogen bonds: A:K.179, A:H.181, A:N.184 Water bridges: A:Y.36, A:D.37, A:D.37, A:D.37, A:H.181 Salt bridges: A:R.48, A:H.181, A:H.181 pi-Stacking: A:W.51 pi-Cation interactions: A:R.48 Metal complexes: A:H.175

1 x 3AP: 3-AMINOPYRIDINE(Non-covalent)

3AP.2: 10 residues within 4Å: Chain A: H.175, L.177, G.178, K.179, T.180, G.191, M.230, L.232, D.235 Ligands: HEM.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.180, A:L.232 Hydrogen bonds: A:L.177 Water bridges: A:G.191 pi-Stacking: A:H.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cappel, D. et al., Probing the Dynamic Nature of Water Molecules and Their Influences on Ligand Binding in a Model Binding Site. J.Chem.Inf.Model (2011)

Release Date

2011-10-12

Peptides

CYTOCHROME C PEROXIDASE\, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME C PEROXIDASE\, MITOCHONDRIAL

Related Entries With Identical Sequence