SMTL ID : 2atq.1

RB69 single-stranded DNA binding protein-DNA polymerase fusion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: Y.33, S.36, F.38, K.48, Y.49, R.59, G.84, M.85, A.91, D.95, F.370, K.374, N.377, K.378, V.379, I.380 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.33, A:Y.33, A:S.36, A:Y.49, A:M.85, A:N.377, A:K.378, A:K.378, A:I.380 Salt bridges: A:K.48, A:R.59 pi-Stacking: A:F.38, A:F.38

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: H.45, C.58, S.60, C.68, C.71 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.45, B:C.58, B:C.68, B:C.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, S. et al., Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity. Proteins (2006)

Release Date

2006-05-09

Peptides

DNA polymerase: A
gp32: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase

gp32

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