SMTL ID : 2auz.1

Cathepsin K complexed with a semicarbazone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.122, K.176, R.198, N.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.199 Salt bridges: A:K.122, A:K.176, A:R.198 SO4.2: 4 residues within 4Å: Chain A: N.18, G.185, E.186, N.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.18, A:E.186, A:N.187 SO4.3: 5 residues within 4Å: Chain A: Q.19, G.23, H.162, W.184 Ligands: CT2.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.19, A:W.184 Salt bridges: A:H.162

1 x CT2: 1-(PHENYLMETHYL)CYCLOPENTYL[(1S)-1-FORMYLPENTYL]CARBAMATE(Covalent)

CT2.4: 15 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, G.64, G.65, G.66, Y.67, A.134, L.160, N.161, H.162, A.163 Ligands: SO4.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.134, A:A.163 Hydrogen bonds: A:Q.19, A:C.25, A:G.66, A:N.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adkison, K.K. et al., Semicarbazone-based inhibitors of cathepsin K, are they prodrugs for aldehyde inhibitors?. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-08-08

Peptides

Cathepsin K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin K

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