SMTL ID : 2b9w.1

Crystal Structure of CLA-producing fatty acid isomerase from P. acnes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: D.40, H.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.40, A:H.41 Water bridges: A:D.40 NA.2: 3 residues within 4Å: Chain A: E.101, L.160 Ligands: 12P.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.101

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.306, H.309 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.351 Water bridges: A:R.306, A:R.306, A:R.306 Salt bridges: A:R.306, A:H.309

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 35 residues within 4Å: Chain A: I.12, G.13, A.14, G.15, P.16, A.17, L.36, E.37, R.38, T.39, G.44, K.45, C.46, M.58, G.59, A.60, I.61, M.62, Y.67, F.168, Y.170, V.254, Y.262, Y.281, V.283, Y.328, W.368, Y.370, G.400, E.401, G.406, N.407, F.408, V.411 Ligands: 12P.5 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:K.45, A:Y.281, A:V.283, A:Y.328, A:W.368, A:Y.370 Hydrogen bonds: A:A.14, A:A.17, A:R.38, A:G.44, A:K.45, A:C.46, A:I.61, A:M.62, A:M.62, A:Y.67, A:Y.170, A:Y.370, A:E.401, A:G.406, A:F.408 Water bridges: A:G.15, A:G.15, A:R.38, A:T.39, A:K.45, A:E.401 Salt bridges: A:K.45, A:K.45 pi-Stacking: A:Y.370

1 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.5: 26 residues within 4Å: Chain A: I.61, M.62, L.86, R.87, R.88, F.90, P.100, E.101, G.107, V.110, M.111, D.159, L.160, N.163, F.168, M.191, F.193, A.194, L.198, Y.281, S.295, Y.297, V.312, Y.328 Ligands: NA.2, FAD.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.163, A:Y.297 Water bridges: A:R.88, A:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liavonchanka, A. et al., Structure and mechanism of the Propionibacterium acnes polyunsaturated fatty acid isomerase. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-01-31

Peptides

putative aminooxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative aminooxidase

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