SMTL ID : 2bab.1

Crystal structure of CLA-producing fatty acid isomerase from P. acnes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.38, K.258 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.38, A:R.38 Salt bridges: A:R.38, A:K.258 SO4.2: 2 residues within 4Å: Chain A: R.38 Ligands: SO4.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.38 SO4.3: 2 residues within 4Å: Chain A: R.306, H.309 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.306, A:D.351 Salt bridges: A:R.306, A:H.309

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 32 residues within 4Å: Chain A: I.12, G.13, A.14, G.15, P.16, A.17, L.36, E.37, R.38, T.39, G.44, K.45, M.58, G.59, A.60, I.61, M.62, Y.67, I.226, V.254, Y.262, Y.281, V.283, W.368, Y.370, G.400, E.401, G.406, N.407, F.408, V.411 Ligands: ODD.5 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:K.45, A:Y.281, A:V.283, A:W.368, A:Y.370, A:Y.370 Hydrogen bonds: A:A.14, A:A.17, A:R.38, A:R.38, A:G.44, A:K.45, A:C.46, A:I.61, A:M.62, A:M.62, A:E.401, A:E.401, A:G.406, A:F.408 Water bridges: A:G.15, A:G.18, A:R.38, A:R.38, A:R.38, A:K.45, A:K.45 Salt bridges: A:K.45, A:K.45

1 x ODD: (10E,12Z)-OCTADECA-10,12-DIENOIC ACID(Non-covalent)

ODD.5: 19 residues within 4Å: Chain A: I.61, M.62, V.64, Y.67, L.86, R.87, R.88, F.168, Y.170, Y.184, T.189, F.193, Y.281, S.295, Y.297, V.312, Y.314, Y.370 Ligands: FAD.4 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.61, A:V.64, A:L.86, A:F.168, A:F.168, A:F.168, A:F.168, A:Y.170, A:Y.184, A:T.189, A:Y.297, A:V.312, A:Y.314, A:Y.314 Hydrogen bonds: A:Y.297 Salt bridges: A:R.88

3 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.6: 5 residues within 4Å: Chain A: G.53, R.54, R.55, A.202, D.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.55 BU1.7: 3 residues within 4Å: Chain A: G.118, Q.119, F.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.118 BU1.8: 7 residues within 4Å: Chain A: F.90, P.100, E.101, V.110, M.111, D.159, N.163 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.110 Hydrogen bonds: A:G.107, A:N.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liavonchanka, A. et al., Structure and mechanism of the Propionibacterium acnes polyunsaturated fatty acid isomerase. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-01-31

Peptides

putative aminooxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative aminooxidase

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