SMTL ID : 2bed.1

Structure of FPT bound to inhibitor SCH207736

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.275, C.277, Y.339, H.340 Ligands: 736.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.275, B:D.275, B:C.277, B:H.340

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 15 residues within 4Å: Chain A: K.111, Y.113, Y.147 Chain B: R.180, Y.183, H.226, G.228, Y.229, C.232, R.269, K.272, Y.278, W.281, Y.339 Ligands: 736.3 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.180, B:Y.183, B:Y.229, B:W.281, B:W.281, A:Y.147 Hydrogen bonds: B:Y.278 Salt bridges: B:H.226, B:R.269, B:R.269, B:K.272, B:K.272, A:K.111

1 x 736: (11S)-8-CHLORO-11-[1-(METHYLSULFONYL)PIPERIDIN-4-YL]-6-PIPERAZIN-1-YL-11H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDINE(Non-covalent)

736.3: 12 residues within 4Å: Chain A: K.111, Y.113, H.148 Chain B: C.73, L.74, W.80, W.84, Y.278, D.337, Y.339 Ligands: ZN.1, FPP.2 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.84, B:Y.339, B:Y.339, A:Y.113 Salt bridges: B:D.337 pi-Stacking: B:W.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Njoroge, F.G. et al., Enhanced FTase activity achieved via piperazine interaction with catalytic zinc. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-08-08

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

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