SMTL ID : 2bgi.1

X-Ray Structure of the Ferredoxin-NADP(H) Reductase from Rhodobacter capsulatus complexed with three molecules of the detergent n-heptyl- beta-D-thioglucoside at 1.7 Angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 23 residues within 4Å: Chain A: F.49, R.64, A.65, Y.66, S.67, Y.80, S.81, I.82, V.84, G.87, P.88, L.89, T.90, T.130, A.133, E.264, K.265, A.266, F.267, V.268, E.270, G.271, I.272 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.49, A:A.65, A:E.264 Hydrogen bonds: A:A.65, A:A.65, A:Y.66, A:S.67, A:Y.80, A:I.82, A:L.89, A:T.90, A:T.130, A:V.268, A:G.271, A:I.272 Water bridges: A:S.67, A:S.67, A:Y.80, A:T.130, A:T.130, A:V.268 Salt bridges: A:R.64, A:R.64 pi-Stacking: A:F.267

3 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)

HTG.2: 10 residues within 4Å: Chain A: R.35, P.71, W.73, D.74, R.140, A.172, L.173, D.176, L.178, I.179 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.173, A:L.178, A:I.179 Hydrogen bonds: A:R.35, A:R.35, A:D.74, A:R.140 HTG.3: 6 residues within 4Å: Chain A: A.18, L.54, L.55, E.100, Q.101, I.103 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.18, A:I.103 Hydrogen bonds: A:L.55, A:L.55, A:Q.101 HTG.5: 9 residues within 4Å: Chain A: W.73, R.140, P.142, Y.145, E.146, I.179, L.182, V.183, K.186 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.73, A:Y.145, A:L.182, A:V.183 Hydrogen bonds: A:E.146, A:E.146, A:K.186

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.158, R.195, R.203 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.194, A:T.194 Water bridges: A:R.158, A:R.203 Salt bridges: A:R.158, A:R.195, A:R.203

2 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.6: 3 residues within 4Å: Chain A: I.62, R.64, P.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.64, A:R.64 CO2.7: 6 residues within 4Å: Chain A: S.23, V.24, R.25, S.33, F.34, R.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nogues, I. et al., The Ferredoxin-Nadp(H) Reductase from Rhodobacter Capsulatus: Molecular Structure and Catalytic Mechanism. Biochemistry (2005)

Release Date

2005-09-07

Peptides

FERREDOXIN-NADP(H) REDUCTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FERREDOXIN-NADP(H) REDUCTASE

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