SMTL ID : 2vni.1

X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH 2P-AMP AT 2.37 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 22 residues within 4Å: Chain A: F.49, R.64, A.65, Y.66, S.67, Y.80, S.81, I.82, V.84, G.87, P.88, L.89, T.90, T.130, A.133, E.264, K.265, A.266, F.267, V.268, G.271, I.272 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.49, A:A.65 Hydrogen bonds: A:A.65, A:A.65, A:Y.66, A:S.67, A:Y.80, A:I.82, A:L.89, A:T.90, A:T.130, A:T.130, A:V.268, A:G.271, A:I.272 Water bridges: A:S.67, A:S.67, A:Y.80 Salt bridges: A:R.64, A:R.64 pi-Stacking: A:F.267

1 x A2P: ADENOSINE-2'-5'-DIPHOSPHATE(Non-covalent)

A2P.2: 11 residues within 4Å: Chain A: T.128, A.156, C.157, R.158, T.194, R.195, R.203, T.205, A.236, F.237, D.240 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:C.157, A:T.194, A:R.203, A:T.205, A:D.240, A:D.240 Water bridges: A:R.203 Salt bridges: A:R.158, A:R.195, A:R.203 pi-Stacking: A:F.237 pi-Cation interactions: A:R.203, A:R.203

1 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)

HTG.3: 6 residues within 4Å: Chain A: A.18, L.54, L.55, E.100, Q.101, I.103 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.18, A:I.103 Hydrogen bonds: A:L.55, A:Q.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bortolotti, A. et al., Coenzyme Binding and Hydride Transfer in Rhodobacter Capsulatus Ferredoxin/Flavodoxin Nadp(H) Oxidoreductase. Biochim.Biophys.Acta (2009)

Release Date

2008-11-11

Peptides

NADPH\:FERREDOXIN REDUCTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NADPH\:FERREDOXIN REDUCTASE

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