- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PRO- LEU: VALINE-PROLINE-LEUCINE TRIPEPTIDE(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: D.271, H.354, T.381, E.383, E.406
- Ligands: MG.3
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.271, A:H.354, A:E.383, A:E.406, H2O.4
MG.3: 6 residues within 4Å:- Chain A: Y.229, D.260, D.271, T.273, E.406
- Ligands: MG.2
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.260, A:D.271, A:D.271, A:E.406, H2O.4
MG.4: 1 residues within 4Å:- Chain A: R.399
No protein-ligand interaction detected (PLIP)MG.7: 6 residues within 4Å:- Chain B: D.271, H.354, T.381, E.383, E.406
- Ligands: MG.8
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.271, B:H.354, B:E.383, B:E.406, H2O.8
MG.8: 6 residues within 4Å:- Chain B: Y.229, D.260, D.271, T.273, E.406
- Ligands: MG.7
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.260, B:D.271, B:D.271, B:E.406, H2O.8
MG.9: 1 residues within 4Å:- Chain B: R.399
No protein-ligand interaction detected (PLIP)MG.12: 6 residues within 4Å:- Chain C: D.271, H.354, T.381, E.383, E.406
- Ligands: MG.13
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.271, C:H.354, C:E.383, C:E.406, H2O.11
MG.13: 6 residues within 4Å:- Chain C: Y.229, D.260, D.271, T.273, E.406
- Ligands: MG.12
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.260, C:D.271, C:D.271, C:E.406, H2O.11
MG.14: 1 residues within 4Å:- Chain C: R.399
No protein-ligand interaction detected (PLIP)MG.17: 6 residues within 4Å:- Chain D: D.271, H.354, T.381, E.383, E.406
- Ligands: MG.18
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.271, D:H.354, D:E.383, D:E.406, H2O.15
MG.18: 6 residues within 4Å:- Chain D: Y.229, D.260, D.271, T.273, E.406
- Ligands: MG.17
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.260, D:D.271, D:D.271, D:E.406, H2O.15
MG.19: 1 residues within 4Å:- Chain D: R.399
No protein-ligand interaction detected (PLIP)- 4 x FLC: CITRATE ANION(Non-covalent)
FLC.5: 4 residues within 4Å:- Chain A: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.221, A:R.221
- Salt bridges: A:R.186, A:R.186, A:H.222, A:H.222
FLC.10: 4 residues within 4Å:- Chain B: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.221, B:R.221
- Salt bridges: B:R.186, B:R.186, B:H.222, B:H.222
FLC.15: 4 residues within 4Å:- Chain C: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.221, C:R.221
- Salt bridges: C:R.186, C:R.186, C:H.222, C:H.222
FLC.20: 4 residues within 4Å:- Chain D: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.221, D:R.221
- Salt bridges: D:R.186, D:R.186, D:H.222, D:H.222
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Graham, S.C. et al., Structural and Functional Implications of Metal Ion Selection in Aminopeptidase P, a Metalloprotease with a Dinuclear Metal Center. Biochemistry (2005)
- Release Date
- 2005-09-29
- Peptides
- XAA-PRO AMINOPEPTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PRO- LEU: VALINE-PROLINE-LEUCINE TRIPEPTIDE(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Graham, S.C. et al., Structural and Functional Implications of Metal Ion Selection in Aminopeptidase P, a Metalloprotease with a Dinuclear Metal Center. Biochemistry (2005)
- Release Date
- 2005-09-29
- Peptides
- XAA-PRO AMINOPEPTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A