SMTL ID : 2bme.1 (3 other biounits)

high resolution structure of GppNHp-bound human Rab4a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 23 residues within 4Å: Chain A: N.18, A.19, G.20, T.21, G.22, K.23, S.24, C.25, F.35, S.39, N.40, H.41, T.42, A.67, G.68, N.123, K.124, D.126, L.127, S.153, A.154, L.155 Ligands: MG.5 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.20, A:T.21, A:G.22, A:K.23, A:K.23, A:S.24, A:S.24, A:C.25, A:S.39, A:N.40, A:T.42, A:T.42, A:T.66, A:G.68, A:N.123, A:K.124, A:K.124, A:A.154, A:L.155 Water bridges: A:Q.69, A:Q.69 Salt bridges: A:D.126 pi-Stacking: A:F.35, A:F.35

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: F.135, L.150, E.151, E.158, N.159 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.151, A:E.151, A:N.159, A:N.159 TRS.3: 4 residues within 4Å: Chain A: F.47, S.49, K.60, Q.62 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.49, A:S.49, A:K.60, A:Q.62 Water bridges: A:K.60

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 5 residues within 4Å: Chain A: Q.143, E.146, L.147, M.148, K.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.170 Water bridges: A:M.148

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: S.24, T.42 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.24, A:T.42, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, S.K. et al., High Resolution Crystal Structures of Human Rab4A in its Active and Inactive Conformations. FEBS Lett. (2005)

Release Date

2005-04-25

Peptides

RAS-RELATED PROTEIN RAB4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAS-RELATED PROTEIN RAB4A

Related Entries With Identical Sequence