SMTL ID : 2bn0.2 (1 other biounit)

Banana Lectin bound to Laminaribiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 7 residues within 4Å: Chain A: G.14, G.15, V.88, G.129, K.130, F.131, D.133 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.15 BGC-BGC.2: 8 residues within 4Å: Chain A: G.34, D.35, V.36, D.38, G.59, G.60, T.61, F.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.60, A:T.61 BGC-BGC.3: 7 residues within 4Å: Chain B: G.14, G.15, V.88, G.129, K.130, F.131, D.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.15 Water bridges: B:G.14 BGC-BGC.4: 9 residues within 4Å: Chain B: G.34, D.35, V.36, D.38, G.59, G.60, T.61, Y.83, F.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.60, B:T.61

2 x CD: CADMIUM ION(Non-covalent)

CD.5: 2 residues within 4Å: Chain B: D.41, H.54 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.41, B:D.41, B:H.54 CD.6: 1 residues within 4Å: Chain B: H.84 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.84

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain B: S.16, A.17, R.127 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.17 Salt bridges: B:R.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meagher, J.L. et al., Crystal Structure of Banana Lectin Reveals a Novel Second Sugar Binding Site. Glycobiology (2005)

Release Date

2005-06-16

Peptides

RIPENING-ASSOCIATED PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

RIPENING-ASSOCIATED PROTEIN

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