SMTL ID : 8hyf.1

Crystal Structure of Banana Lectin In-complex with Fucose at 2.95 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: G.12, N.13, V.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.13 Water bridges: A:G.14 GOL.2: 8 residues within 4Å: Chain A: G.34, D.35, V.36, D.38, G.59, G.60, Y.83, F.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.35, A:V.36, A:G.60 GOL.3: 5 residues within 4Å: Chain A: G.15, G.129, K.130, F.131, D.133 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.15, A:G.129, A:K.130, A:F.131, A:F.131, A:D.133 GOL.4: 3 residues within 4Å: Chain A: S.16, A.17, R.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.17, A:R.127, A:R.127 GOL.5: 1 residues within 4Å: Chain A: H.63 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.63 GOL.10: 7 residues within 4Å: Chain B: G.14, G.15, V.88, G.129, K.130, F.131, D.133 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.129, B:K.130, B:F.131, B:F.131 Water bridges: B:G.14 GOL.11: 7 residues within 4Å: Chain B: G.34, D.35, V.36, D.38, G.60, Y.83, F.131 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.34, B:D.35, B:D.35, B:V.36, B:V.36, B:G.60 GOL.12: 3 residues within 4Å: Chain B: S.16, A.17, R.127 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.17, B:R.127, B:R.127

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: F.18, D.19 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: R.53, H.54 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x CD: CADMIUM ION(Non-covalent)

CD.9: 1 residues within 4Å: Chain A: H.84 No protein-ligand interaction detected (PLIP)

2 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.13: 7 residues within 4Å: Chain B: S.33, G.34, T.61, H.63, F.104, G.105, N.106 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.33, B:S.33, B:G.34, B:T.61, B:G.105, B:N.106 Salt bridges: B:H.63 FUC.14: 2 residues within 4Å: Chain B: H.84, G.85 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:H.84 Hydrogen bonds: B:H.84 Water bridges: B:H.84, B:H.84, B:H.84, B:H.84 Salt bridges: B:H.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rasheed, S. et al., Crystal Structure of Banana Lectin in-Complex with L-Fucose at 2.95 A Resolution. To Be Published

Release Date

2024-01-17

Peptides

Ripening-associated protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Ripening-associated protein

Related Entries With Identical Sequence