- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PRO: PROLINE(Non-covalent)
- 4 x LEU: LEUCINE(Non-covalent)
LEU.2: 8 residues within 4Å:- Chain A: H.350, G.351, H.354, Y.366, R.370
- Chain B: W.88
- Chain C: R.153
- Ligands: PRO.1
8 PLIP interactions:4 interactions with chain A, 1 Ligand-Ligand interactions, 3 interactions with chain C- Hydrogen bonds: A:G.351, A:G.351
- Water bridges: A:E.383, L.2, C:R.153, C:R.153
- Salt bridges: A:R.370, C:R.153
LEU.9: 8 residues within 4Å:- Chain A: W.88
- Chain B: H.350, G.351, H.354, Y.366, R.370
- Chain D: R.153
- Ligands: PRO.8
8 PLIP interactions:4 interactions with chain B, 1 Ligand-Ligand interactions, 3 interactions with chain D- Hydrogen bonds: B:G.351, B:G.351
- Water bridges: B:E.383, L.9, D:R.153, D:R.153
- Salt bridges: B:R.370, D:R.153
LEU.16: 8 residues within 4Å:- Chain A: R.153
- Chain C: H.350, G.351, H.354, Y.366, R.370
- Chain D: W.88
- Ligands: PRO.15
7 PLIP interactions:3 interactions with chain A, 3 interactions with chain C, 1 Ligand-Ligand interactions- Water bridges: A:R.153, A:R.153, L.16
- Salt bridges: A:R.153, C:R.370
- Hydrogen bonds: C:G.351, C:G.351
LEU.23: 8 residues within 4Å:- Chain B: R.153
- Chain C: W.88
- Chain D: H.350, G.351, H.354, Y.366, R.370
- Ligands: PRO.22
8 PLIP interactions:4 interactions with chain D, 1 Ligand-Ligand interactions, 3 interactions with chain B- Hydrogen bonds: D:G.351, D:G.351
- Water bridges: D:E.383, L.23, B:R.153, B:R.153
- Salt bridges: D:R.370, B:R.153
- 8 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 6 residues within 4Å:- Chain A: D.271, H.354, T.381, E.383, E.406
- Ligands: MN.4
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.271, A:H.354, A:E.383, A:E.406, H2O.11
MN.4: 6 residues within 4Å:- Chain A: Y.229, D.260, D.271, T.273, E.406
- Ligands: MN.3
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.260, A:D.260, A:D.271, A:E.406, H2O.11
MN.10: 6 residues within 4Å:- Chain B: D.271, H.354, T.381, E.383, E.406
- Ligands: MN.11
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.271, B:H.354, B:E.383, B:E.406, H2O.22
MN.11: 6 residues within 4Å:- Chain B: Y.229, D.260, D.271, T.273, E.406
- Ligands: MN.10
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.260, B:D.260, B:D.271, B:E.406, H2O.22
MN.17: 6 residues within 4Å:- Chain C: D.271, H.354, T.381, E.383, E.406
- Ligands: MN.18
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.271, C:H.354, C:E.383, C:E.406, H2O.33
MN.18: 6 residues within 4Å:- Chain C: Y.229, D.260, D.271, T.273, E.406
- Ligands: MN.17
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.260, C:D.260, C:D.271, C:E.406, H2O.33
MN.24: 6 residues within 4Å:- Chain D: D.271, H.354, T.381, E.383, E.406
- Ligands: MN.25
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.271, D:H.354, D:E.383, D:E.406, H2O.44
MN.25: 6 residues within 4Å:- Chain D: Y.229, D.260, D.271, T.273, E.406
- Ligands: MN.24
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.260, D:D.260, D:D.271, D:E.406, H2O.44
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 1 residues within 4Å:- Chain A: R.399
No protein-ligand interaction detected (PLIP)MG.12: 1 residues within 4Å:- Chain B: R.399
No protein-ligand interaction detected (PLIP)MG.19: 1 residues within 4Å:- Chain C: R.399
No protein-ligand interaction detected (PLIP)MG.26: 1 residues within 4Å:- Chain D: R.399
No protein-ligand interaction detected (PLIP)- 4 x FLC: CITRATE ANION(Non-covalent)
FLC.6: 4 residues within 4Å:- Chain A: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.221, A:R.221
- Salt bridges: A:R.186, A:R.186, A:H.222, A:H.222
FLC.13: 4 residues within 4Å:- Chain B: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.221, B:R.221
- Salt bridges: B:R.186, B:R.186, B:H.222, B:H.222
FLC.20: 4 residues within 4Å:- Chain C: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.221, C:R.221
- Salt bridges: C:R.186, C:R.186, C:H.222, C:H.222
FLC.27: 4 residues within 4Å:- Chain D: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.221, D:R.221
- Salt bridges: D:R.186, D:R.186, D:H.222, D:H.222
- 4 x ZN: ZINC ION(Non-covalent)
ZN.7: 3 residues within 4Å:- Chain A: H.243, H.361
- Ligands: PRO.1
4 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: PRO.1, A:H.243, A:H.361, H2O.11
ZN.14: 3 residues within 4Å:- Chain B: H.243, H.361
- Ligands: PRO.8
4 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: B:H.243, B:H.361, PRO.8, H2O.22
ZN.21: 3 residues within 4Å:- Chain C: H.243, H.361
- Ligands: PRO.15
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.243, C:H.361, H2O.33
ZN.28: 3 residues within 4Å:- Chain D: H.243, H.361
- Ligands: PRO.22
4 PLIP interactions:2 interactions with chain D, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: D:H.243, D:H.361, PRO.22, H2O.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Graham, S.C. et al., Structural and Functional Implications of Metal Ion Selection in Aminopeptidase P, a Metalloprotease with a Dinuclear Metal Center. Biochemistry (2005)
- Release Date
- 2005-09-29
- Peptides
- XAA-PRO AMINOPEPTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PRO: PROLINE(Non-covalent)
- 4 x LEU: LEUCINE(Non-covalent)
- 8 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FLC: CITRATE ANION(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Graham, S.C. et al., Structural and Functional Implications of Metal Ion Selection in Aminopeptidase P, a Metalloprotease with a Dinuclear Metal Center. Biochemistry (2005)
- Release Date
- 2005-09-29
- Peptides
- XAA-PRO AMINOPEPTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A