SMTL ID : 2bsy.1

EPSTEIN BARR VIRUS DUTPASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 12 residues within 4Å: Chain A: L.60, H.71, G.73, I.74, I.75, D.76, Y.79, E.82, L.83, R.84, R.171, S.172 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.75, A:Y.79 Hydrogen bonds: A:I.74, A:D.76, A:R.84, A:R.84, A:S.172, A:S.172, A:S.172 Water bridges: A:R.84, A:R.171, A:R.171, A:R.171, A:G.173, A:Q.213 Salt bridges: A:R.171

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: C.184, R.185, R.187, R.238, S.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.185 Water bridges: A:R.238, A:S.239 Salt bridges: A:R.187, A:R.238 SO4.3: 4 residues within 4Å: Chain A: P.162, H.163, R.165, K.219 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.163 Water bridges: A:R.165 Salt bridges: A:H.163, A:R.165, A:K.219 SO4.4: 3 residues within 4Å: Chain A: Q.19, K.103, H.105 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.19 Water bridges: A:Q.20, A:R.25, A:R.25, A:K.103 Salt bridges: A:K.103 SO4.5: 5 residues within 4Å: Chain A: Q.90, H.147, Q.148, T.196, F.198 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarbouriech, N. et al., The Monomeric Dutpase from Epstein-Barr Virus Mimics Trimeric Dutpases. Structure (2005)

Release Date

2005-09-15

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE

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