- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
DHB.2: 10 residues within 4Å:- Chain A: P.19, Y.20, H.142
- Chain B: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.1
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:P.19, A:Y.20, B:W.150, B:R.158
- Hydrogen bonds: A:Y.20, B:R.158
- Water bridges: A:Y.20
- Salt bridges: A:H.142
- pi-Stacking: B:Y.148
DHB.4: 10 residues within 4Å:- Chain C: P.19, Y.20, H.142
- Chain D: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.3
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:P.19, C:Y.20, D:W.150, D:R.158
- Hydrogen bonds: C:Y.20, D:R.158
- Water bridges: C:Y.20
- Salt bridges: C:H.142
- pi-Stacking: D:Y.148
DHB.6: 10 residues within 4Å:- Chain E: P.19, Y.20, H.142
- Chain F: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.5
9 PLIP interactions:5 interactions with chain E, 4 interactions with chain F- Hydrophobic interactions: E:P.19, E:Y.20, F:W.150, F:R.158
- Hydrogen bonds: E:Y.20, F:R.158
- Water bridges: E:Y.20
- Salt bridges: E:H.142
- pi-Stacking: F:Y.148
DHB.8: 10 residues within 4Å:- Chain G: P.19, Y.20, H.142
- Chain H: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.7
9 PLIP interactions:4 interactions with chain H, 5 interactions with chain G- Hydrophobic interactions: H:W.150, H:R.158, G:P.19, G:Y.20
- Hydrogen bonds: H:R.158, G:Y.20
- pi-Stacking: H:Y.148
- Water bridges: G:Y.20
- Salt bridges: G:H.142
DHB.10: 10 residues within 4Å:- Chain I: P.19, Y.20, H.142
- Chain J: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.9
9 PLIP interactions:5 interactions with chain I, 4 interactions with chain J- Hydrophobic interactions: I:P.19, I:Y.20, J:W.150, J:R.158
- Hydrogen bonds: I:Y.20, J:R.158
- Water bridges: I:Y.20
- Salt bridges: I:H.142
- pi-Stacking: J:Y.148
DHB.12: 10 residues within 4Å:- Chain K: P.19, Y.20, H.142
- Chain L: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.11
8 PLIP interactions:4 interactions with chain L, 4 interactions with chain K- Hydrophobic interactions: L:W.150, L:R.158, K:P.19, K:Y.20
- Hydrogen bonds: L:R.158
- pi-Stacking: L:Y.148
- Water bridges: K:Y.20
- Salt bridges: K:H.142
DHB.14: 10 residues within 4Å:- Chain M: P.19, Y.20, H.142
- Chain N: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.13
9 PLIP interactions:4 interactions with chain N, 5 interactions with chain M- Hydrophobic interactions: N:W.150, N:R.158, M:P.19, M:Y.20
- Hydrogen bonds: N:R.158, M:Y.20
- pi-Stacking: N:Y.148
- Water bridges: M:Y.20
- Salt bridges: M:H.142
DHB.16: 10 residues within 4Å:- Chain O: P.19, Y.20, H.142
- Chain P: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.15
10 PLIP interactions:6 interactions with chain P, 4 interactions with chain O- Hydrophobic interactions: P:W.150, P:R.158, O:P.19, O:Y.20
- Hydrogen bonds: P:Y.148, P:R.158, P:H.163
- pi-Stacking: P:Y.148
- Water bridges: O:Y.20
- Salt bridges: O:H.142
DHB.18: 10 residues within 4Å:- Chain Q: P.19, Y.20, H.142
- Chain R: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.17
8 PLIP interactions:4 interactions with chain Q, 4 interactions with chain R- Hydrophobic interactions: Q:P.19, Q:Y.20, R:W.150, R:R.158
- Water bridges: Q:Y.20
- Salt bridges: Q:H.142
- Hydrogen bonds: R:R.158
- pi-Stacking: R:Y.148
DHB.20: 10 residues within 4Å:- Chain S: P.19, Y.20, H.142
- Chain T: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.19
8 PLIP interactions:4 interactions with chain T, 4 interactions with chain S- Hydrophobic interactions: T:W.150, T:R.158, S:P.19, S:Y.20
- Hydrogen bonds: T:R.158
- pi-Stacking: T:Y.148
- Water bridges: S:Y.20
- Salt bridges: S:H.142
DHB.22: 10 residues within 4Å:- Chain U: P.19, Y.20, H.142
- Chain V: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.21
8 PLIP interactions:4 interactions with chain V, 4 interactions with chain U- Hydrophobic interactions: V:W.150, V:R.158, U:P.19, U:Y.20
- Hydrogen bonds: V:R.158
- pi-Stacking: V:Y.148
- Water bridges: U:Y.20
- Salt bridges: U:H.142
DHB.24: 10 residues within 4Å:- Chain W: P.19, Y.20, H.142
- Chain X: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.23
8 PLIP interactions:4 interactions with chain W, 4 interactions with chain X- Hydrophobic interactions: W:P.19, W:Y.20, X:W.150, X:R.158
- Water bridges: W:Y.20
- Salt bridges: W:H.142
- Hydrogen bonds: X:R.158
- pi-Stacking: X:Y.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vetting, M.W., Crystallographic Studies of Intradiol Dioxygenases. Phd Thesis (2001)
- Release Date
- 2006-10-26
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vetting, M.W., Crystallographic Studies of Intradiol Dioxygenases. Phd Thesis (2001)
- Release Date
- 2006-10-26
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B