- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.6: 4 residues within 4Å:- Chain B: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain C: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain D: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain E: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.24: 4 residues within 4Å:- Chain F: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.29: 4 residues within 4Å:- Chain G: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.33: 4 residues within 4Å:- Chain H: H.194, T.195, N.196, V.197
Ligand excluded by PLIP- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 5 residues within 4Å:- Chain A: G.183, E.187, A.251, E.252
- Chain D: Y.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.187
PEG.12: 5 residues within 4Å:- Chain C: G.183, E.187, A.251, E.252
- Chain H: Y.12
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.187
PEG.21: 5 residues within 4Å:- Chain B: Y.12
- Chain E: G.183, E.187, A.251, E.252
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:E.187
PEG.30: 5 residues within 4Å:- Chain F: Y.12
- Chain G: G.183, E.187, A.251, E.252
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:E.187
- 8 x K: POTASSIUM ION(Non-covalent)
K.4: 5 residues within 4Å:- Chain A: D.36, D.37, D.319
- Chain D: R.26, L.27
5 PLIP interactions:1 interactions with chain D, 2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: D:L.27, A:D.37, A:D.319, H2O.9, H2O.28
K.9: 5 residues within 4Å:- Chain B: D.36, D.37, D.319
- Chain E: R.26, L.27
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: B:D.37, B:D.319, E:L.27, H2O.37, H2O.37
K.13: 5 residues within 4Å:- Chain C: D.36, D.37, D.319
- Chain H: R.26, L.27
5 PLIP interactions:2 interactions with chain C, 1 interactions with chain H, 2 Ligand-Water interactions- Metal complexes: C:D.37, C:D.319, H:L.27, H2O.27, H2O.63
K.18: 5 residues within 4Å:- Chain A: R.26, L.27
- Chain D: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: D:D.37, D:D.319, A:L.27, H2O.2, H2O.2
K.22: 5 residues within 4Å:- Chain B: R.26, L.27
- Chain E: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain E, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: E:D.37, E:D.319, B:L.27, H2O.11, H2O.44
K.27: 5 residues within 4Å:- Chain F: D.36, D.37, D.319
- Chain G: R.26, L.27
5 PLIP interactions:1 interactions with chain G, 2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: G:L.27, F:D.37, F:D.319, H2O.55, H2O.55
K.31: 5 residues within 4Å:- Chain F: R.26, L.27
- Chain G: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain G, 1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: G:D.37, G:D.319, F:L.27, H2O.46, H2O.62
K.36: 5 residues within 4Å:- Chain C: R.26, L.27
- Chain H: D.36, D.37, D.319
5 PLIP interactions:2 interactions with chain H, 1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: H:D.37, H:D.319, C:L.27, H2O.20, H2O.20
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.7: 3 residues within 4Å:- Chain A: P.55
- Chain B: N.298, W.300
No protein-ligand interaction detected (PLIP)PGE.8: 11 residues within 4Å:- Chain A: A.207, S.208, A.209, D.235, P.236, A.237
- Chain B: R.29, S.304, L.307, E.308, T.311
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.29, B:S.304, A:A.207, A:A.237
PGE.16: 3 residues within 4Å:- Chain C: P.55
- Chain D: N.298, W.300
No protein-ligand interaction detected (PLIP)PGE.17: 11 residues within 4Å:- Chain C: A.207, S.208, A.209, D.235, P.236, A.237
- Chain D: R.29, S.304, L.307, E.308, T.311
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:R.29, D:S.304, C:A.207, C:A.237
PGE.25: 3 residues within 4Å:- Chain E: P.55
- Chain F: N.298, W.300
No protein-ligand interaction detected (PLIP)PGE.26: 11 residues within 4Å:- Chain E: A.207, S.208, A.209, D.235, P.236, A.237
- Chain F: R.29, S.304, L.307, E.308, T.311
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:R.29, F:S.304, E:A.207, E:A.237
PGE.34: 3 residues within 4Å:- Chain G: P.55
- Chain H: N.298, W.300
No protein-ligand interaction detected (PLIP)PGE.35: 11 residues within 4Å:- Chain G: A.207, S.208, A.209, D.235, P.236, A.237
- Chain H: R.29, S.304, L.307, E.308, T.311
4 PLIP interactions:2 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:A.207, G:A.237, H:R.29, H:S.304
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)
- Release Date
- 2006-06-20
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 8 x K: POTASSIUM ION(Non-covalent)
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)
- Release Date
- 2006-06-20
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B