SMTL ID : 2c15.1

5-(4-Carboxy-2-oxo-butoxy)-4-oxo-pentanoic acid acid bound to Porphobilinogen synthase from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.245, H2O.13, H2O.13, H2O.15, H2O.15, H2O.15 MG.2: 3 residues within 4Å: Chain B: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:E.245, H2O.32, H2O.32, H2O.35, H2O.35, H2O.35 MG.3: 3 residues within 4Å: Chain C: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain C, 5 Ligand-Water interactions Metal complexes: C:E.245, H2O.50, H2O.50, H2O.53, H2O.53, H2O.53 MG.4: 3 residues within 4Å: Chain D: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain D, 5 Ligand-Water interactions Metal complexes: D:E.245, H2O.70, H2O.70, H2O.72, H2O.72, H2O.72 MG.5: 3 residues within 4Å: Chain E: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain E, 5 Ligand-Water interactions Metal complexes: E:E.245, H2O.87, H2O.87, H2O.90, H2O.90, H2O.90 MG.6: 3 residues within 4Å: Chain F: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain F, 5 Ligand-Water interactions Metal complexes: F:E.245, H2O.107, H2O.107, H2O.109, H2O.109, H2O.109 MG.7: 3 residues within 4Å: Chain G: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain G, 5 Ligand-Water interactions Metal complexes: G:E.245, H2O.125, H2O.125, H2O.127, H2O.127, H2O.127 MG.8: 3 residues within 4Å: Chain H: R.181, E.245, D.249 6 PLIP interactions: 1 interactions with chain H, 5 Ligand-Water interactions Metal complexes: H:E.245, H2O.144, H2O.144, H2O.147, H2O.147, H2O.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)

Release Date

2006-06-20

Peptides

DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

DELTA-AMINOLEVULINIC ACID DEHYDRATASE

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