SMTL ID : 2c3a.2 (1 other biounit)

Structure of unliganded HSV gD reveals a mechanism for receptor- mediated activation of virus entry

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: Q.20, P.71, N.73, N.150 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: Q.6, F.202, I.203, N.206, P.276 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: E.125, E.205, R.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.125, A:E.205 NA.4: 5 residues within 4Å: Chain A: R.46, S.47, W.220, P.223, K.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.47, A:K.224 Water bridges: A:S.47

4 x ZN: ZINC ION(Non-covalent)

ZN.5: 1 residues within 4Å: Chain A: D.126 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.126 ZN.6: 3 residues within 4Å: Chain A: H.18, R.113, D.194 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.18, A:D.194, A:D.194 ZN.7: 1 residues within 4Å: Chain A: D.280 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.280, A:D.280, H2O.2 ZN.8: 2 residues within 4Å: Chain A: H.221, D.251 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.221, A:D.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krummenacher, C. et al., Structure of Unliganded Hsv Gd Reveals a Mechanism for Receptor-Mediated Activation of Virus Entry. Embo J. (2005)

Release Date

2005-12-21

Peptides

GLYCOPROTEIN D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLYCOPROTEIN D

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