SMTL ID : 2cf4.1

Pyrococcus horikoshii TET1 peptidase can assemble into a tetrahedron or a large octahedral shell

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

homo-12-mer

Ligands

24 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: D.173, E.206, H.307 Ligands: CO.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.173, A:E.206, A:E.206, A:H.307 CO.2: 7 residues within 4Å: Chain A: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.62, A:D.173, A:D.228, A:D.228 CO.3: 4 residues within 4Å: Chain B: D.173, E.206, H.307 Ligands: CO.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.173, B:E.206, B:E.206, B:H.307 CO.4: 7 residues within 4Å: Chain B: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.62, B:D.173, B:D.228, B:D.228 CO.5: 4 residues within 4Å: Chain C: D.173, E.206, H.307 Ligands: CO.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.173, C:E.206, C:E.206, C:H.307 CO.6: 7 residues within 4Å: Chain C: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.62, C:D.173, C:D.228, C:D.228 CO.7: 4 residues within 4Å: Chain D: D.173, E.206, H.307 Ligands: CO.8 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.173, D:E.206, D:E.206, D:H.307 CO.8: 7 residues within 4Å: Chain D: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.62, D:D.173, D:D.228, D:D.228 CO.9: 4 residues within 4Å: Chain E: D.173, E.206, H.307 Ligands: CO.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.173, E:E.206, E:E.206, E:H.307 CO.10: 7 residues within 4Å: Chain E: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.9 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.62, E:D.173, E:D.228, E:D.228 CO.11: 4 residues within 4Å: Chain F: D.173, E.206, H.307 Ligands: CO.12 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.173, F:E.206, F:E.206, F:H.307 CO.12: 7 residues within 4Å: Chain F: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.11 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.62, F:D.173, F:D.228, F:D.228 CO.13: 4 residues within 4Å: Chain G: D.173, E.206, H.307 Ligands: CO.14 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.173, G:E.206, G:E.206, G:H.307 CO.14: 7 residues within 4Å: Chain G: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.13 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.62, G:D.173, G:D.228, G:D.228 CO.15: 4 residues within 4Å: Chain H: D.173, E.206, H.307 Ligands: CO.16 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.173, H:E.206, H:E.206, H:H.307 CO.16: 7 residues within 4Å: Chain H: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.15 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.62, H:D.173, H:D.228, H:D.228 CO.17: 4 residues within 4Å: Chain I: D.173, E.206, H.307 Ligands: CO.18 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.173, I:E.206, I:E.206, I:H.307 CO.18: 7 residues within 4Å: Chain I: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.17 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.62, I:D.173, I:D.228, I:D.228 CO.19: 4 residues within 4Å: Chain J: D.173, E.206, H.307 Ligands: CO.20 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.173, J:E.206, J:E.206, J:H.307 CO.20: 7 residues within 4Å: Chain J: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.19 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.62, J:D.173, J:D.228, J:D.228 CO.21: 4 residues within 4Å: Chain K: D.173, E.206, H.307 Ligands: CO.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.173, K:E.206, K:E.206, K:H.307 CO.22: 7 residues within 4Å: Chain K: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.21 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.62, K:D.173, K:D.228, K:D.228 CO.23: 4 residues within 4Å: Chain L: D.173, E.206, H.307 Ligands: CO.24 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:D.173, L:E.206, L:E.206, L:H.307 CO.24: 7 residues within 4Å: Chain L: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.23 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.62, L:D.173, L:D.228, L:D.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schoehn, G. et al., An Archaeal Peptidase Assembles Into Two Different Quaternary Structures: A Tetrahedron and a Giant Octahedron. J.Biol.Chem. (2006)

Release Date

2006-09-14

Peptides

PROTEIN PH0519: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

PROTEIN PH0519

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