SMTL ID : 2d1r.1

Crystal structure of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN and AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 17 residues within 4Å: Chain A: S.200, S.201, H.247, G.318, A.319, P.320, Q.340, G.341, Y.342, G.343, L.344, T.345, D.424, I.436, R.439, K.531 Ligands: OLU.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.200, A:S.201, A:G.318, A:Q.340, A:G.341, A:G.343, A:T.345, A:T.345, A:T.345, A:D.424 Water bridges: A:S.200, A:S.200, A:T.422, A:T.529 Salt bridges: A:H.247, A:K.531 pi-Stacking: A:Y.342, A:Y.342

1 x OLU: 2-(6-HYDROXY-1,3-BENZOTHIAZOL-2-YL)-1,3-THIAZOL-4(5H)-ONE(Non-covalent)

OLU.2: 14 residues within 4Å: Chain A: H.247, G.248, F.249, T.253, S.316, G.317, G.318, G.341, G.343, L.344, T.345, S.349, A.350 Ligands: AMP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.249, A:T.253, A:A.350 Hydrogen bonds: A:S.316, A:A.350 pi-Stacking: A:F.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatsu, T. et al., Structural basis for the spectral difference in luciferase bioluminescence. Nature (2006)

Release Date

2006-03-21

Peptides

Luciferin 4-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Luciferin 4-monooxygenase

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