SMTL ID : 2d1s.1

Crystal structure of the thermostable Japanese Firefly Luciferase complexed with High-energy intermediate analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: S.201, G.202, G.527, L.528, T.529, G.530, K.531 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: S.201, G.202, G.527, L.528 Ligand excluded by PLIP

1 x SLU: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE(Non-covalent)

SLU.3: 26 residues within 4Å: Chain A: S.200, S.201, H.247, G.248, F.249, T.253, I.288, S.316, G.317, G.318, A.319, P.320, Q.340, G.341, Y.342, G.343, L.344, T.345, T.348, S.349, A.350, T.422, D.424, I.436, R.439, K.531 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.249, A:T.253, A:I.288, A:A.350 Hydrogen bonds: A:S.201, A:G.318, A:Q.340, A:G.341, A:G.343, A:T.345, A:T.345, A:T.345, A:A.350, A:D.424 Water bridges: A:S.200, A:S.200, A:S.201, A:S.201, A:T.422 Salt bridges: A:H.247, A:K.531 pi-Stacking: A:F.249, A:Y.342, A:Y.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatsu, T. et al., Structural basis for the spectral difference in luciferase bioluminescence. Nature (2006)

Release Date

2006-03-21

Peptides

Luciferin 4-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Luciferin 4-monooxygenase

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