SMTL ID : 2d5f.1

Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x CO3: CARBONATE ION(Non-functional Binders)

CO3.1: 4 residues within 4Å: Chain A: R.50, H.58, Y.131, T.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.50, A:T.133 CO3.3: 5 residues within 4Å: Chain B: R.50, H.58, Y.131, T.133, A.143 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.58, B:Y.131, B:T.133, B:T.133 CO3.5: 4 residues within 4Å: Chain C: R.50, H.58, Y.131, T.133 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.50, C:T.133 CO3.7: 5 residues within 4Å: Chain D: R.50, H.58, Y.131, T.133, A.143 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:H.58, D:Y.131, D:T.133, D:T.133 CO3.9: 4 residues within 4Å: Chain E: R.50, H.58, Y.131, T.133 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.50, E:T.133 CO3.11: 5 residues within 4Å: Chain F: R.50, H.58, Y.131, T.133, A.143 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:H.58, F:Y.131, F:T.133, F:T.133

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: H.383, E.432, Y.441 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: H.383, E.432, Y.441 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: H.383, E.432, Y.441 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain D: H.383, E.432, Y.441 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain E: H.383, E.432, Y.441 No protein-ligand interaction detected (PLIP) MG.12: 3 residues within 4Å: Chain F: H.383, E.432, Y.441 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tandang-Silvas, M.R. et al., Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta (2010)

Release Date

2006-11-14

Peptides

glycinin A3B4 subunit: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

glycinin A3B4 subunit

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