SMTL ID : 2d5h.2 (1 other biounit)

Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x CO3: CARBONATE ION(Non-functional Binders)

CO3.1: 5 residues within 4Å: Chain A: R.50, H.58, I.69, Y.131, T.133 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.58, A:Y.131, A:Y.131, A:T.133 CO3.3: 4 residues within 4Å: Chain B: R.50, I.69, L.123, T.133 No protein-ligand interaction detected (PLIP) CO3.5: 2 residues within 4Å: Chain C: I.69, T.133 No protein-ligand interaction detected (PLIP)

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Y.380, H.383, E.432, Y.441 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.432 MG.4: 4 residues within 4Å: Chain B: Y.380, H.383, E.432, Y.441 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.432 MG.6: 4 residues within 4Å: Chain C: Y.380, H.383, E.432, Y.441 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:Y.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tandang-Silvas, M.R. et al., Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta (2010)

Release Date

2006-11-14

Peptides

glycinin A3B4 subunit: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

glycinin A3B4 subunit

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