SMTL ID : 2dbr.3 (2 other biounits)

Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.78, N.95, R.160, V.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.95 Salt bridges: A:R.160 SO4.2: 8 residues within 4Å: Chain A: L.53, A.75, V.76, G.77, L.100, R.241, H.288 Ligands: NAP.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.76, A:G.77 Salt bridges: A:R.241, A:H.288 SO4.4: 4 residues within 4Å: Chain B: Y.78, N.95, R.160, V.321 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.78, B:N.95 Salt bridges: B:R.160 SO4.5: 8 residues within 4Å: Chain B: L.53, A.75, V.76, G.77, L.100, R.241, S.291 Ligands: NAP.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.76, B:G.77, B:S.291 Salt bridges: B:R.241

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 27 residues within 4Å: Chain A: V.76, G.77, L.100, T.104, G.157, L.158, G.159, R.160, I.161, Y.179, S.180, R.181, T.182, K.184, A.211, V.212, P.213, T.218, I.239, A.240, R.241, D.265, V.266, H.288, G.290, S.291 Ligands: SO4.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.76, A:L.100, A:T.104 Hydrogen bonds: A:L.158, A:R.160, A:I.161, A:S.180, A:R.181, A:R.181, A:T.182, A:K.184, A:A.240, A:R.241 Water bridges: A:G.159, A:G.162 Salt bridges: A:R.160, A:R.160, A:R.181, A:K.184 NAP.6: 27 residues within 4Å: Chain B: V.76, L.100, T.104, G.157, L.158, G.159, R.160, I.161, Y.179, S.180, R.181, T.182, K.184, A.211, V.212, P.213, T.218, I.239, A.240, R.241, D.265, V.266, H.288, I.289, G.290, S.291 Ligands: SO4.5 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:V.76, B:L.100, B:T.104, B:I.161 Hydrogen bonds: B:L.158, B:R.160, B:I.161, B:S.180, B:R.181, B:T.182, B:A.240, B:D.265, B:G.290, B:S.291 Water bridges: B:G.159, B:G.162 Salt bridges: B:R.160, B:R.160, B:R.181, B:K.184 pi-Cation interactions: B:R.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshikawa, S. et al., Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate. Acta Crystallogr.,Sect.D (2007)

Release Date

2006-06-16

Peptides

Glyoxylate reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Glyoxylate reductase

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