Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 2dbz.1
Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P61)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.45 Å
Oligo State
homo-dimer
Ligands
4 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
5 residues within 4Å:
Chain A:
Y.78
,
N.95
,
R.160
,
V.321
Ligands:
NAP.3
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:Y.78
,
A:N.95
Salt bridges:
A:R.160
SO4.2:
9 residues within 4Å:
Chain A:
L.53
,
A.75
,
V.76
,
G.77
,
L.100
,
R.241
,
H.288
,
S.291
Ligands:
NAP.3
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:V.76
,
A:G.77
,
A:S.291
Salt bridges:
A:R.241
,
A:H.288
SO4.4:
4 residues within 4Å:
Chain B:
Y.78
,
N.95
,
R.160
Ligands:
NAP.6
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:Y.78
,
B:N.95
Water bridges:
B:R.160
Salt bridges:
B:R.160
SO4.5:
9 residues within 4Å:
Chain B:
L.53
,
A.75
,
V.76
,
G.77
,
L.100
,
R.241
,
H.288
,
S.291
Ligands:
NAP.6
5
PLIP interactions
:
5 interactions with chain B
Hydrogen bonds:
B:V.76
,
B:G.77
,
B:S.291
Salt bridges:
B:R.241
,
B:H.288
2 x
NAP
:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
NAP.3:
28 residues within 4Å:
Chain A:
V.76
,
G.77
,
T.104
,
G.157
,
L.158
,
G.159
,
R.160
,
I.161
,
Y.179
,
S.180
,
R.181
,
T.182
,
K.184
,
A.211
,
V.212
,
P.213
,
E.217
,
T.218
,
I.239
,
A.240
,
R.241
,
D.265
,
V.266
,
H.288
,
G.290
,
S.291
Ligands:
SO4.1
,
SO4.2
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:V.76
,
A:T.104
Hydrogen bonds:
A:L.158
,
A:R.160
,
A:I.161
,
A:S.180
,
A:R.181
,
A:T.182
,
A:T.182
,
A:K.184
,
A:D.265
,
A:S.291
Water bridges:
A:G.162
Salt bridges:
A:R.160
,
A:R.160
,
A:R.181
NAP.6:
27 residues within 4Å:
Chain B:
V.76
,
G.77
,
T.104
,
G.157
,
L.158
,
G.159
,
R.160
,
I.161
,
Y.179
,
S.180
,
R.181
,
T.182
,
A.211
,
V.212
,
P.213
,
E.217
,
T.218
,
I.239
,
A.240
,
R.241
,
D.265
,
V.266
,
H.288
,
G.290
,
S.291
Ligands:
SO4.4
,
SO4.5
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:V.76
,
B:T.104
Hydrogen bonds:
B:L.158
,
B:R.160
,
B:I.161
,
B:S.180
,
B:R.181
,
B:T.182
,
B:T.182
,
B:R.241
,
B:D.265
,
B:S.291
Water bridges:
B:R.160
,
B:R.160
Salt bridges:
B:R.160
,
B:R.160
,
B:R.181
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Yoshikawa, S. et al., Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate. Acta Crystallogr.,Sect.D (2007)
Release Date
2006-06-16
Peptides
Glyoxylate reductase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Glyoxylate reductase
Toggle Identical (AB)
Related Entries With Identical Sequence
2dbq.1
|
2dbr.1
|
2dbr.2
|
2dbr.3
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme