- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.24 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 8 residues within 4Å:- Chain A: E.43, W.45, R.75, Y.111, W.113, S.160, I.161
- Chain B: Y.310
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.45, A:W.45, A:I.161, B:Y.310
- Hydrogen bonds: A:R.75, A:R.75, A:W.113
- Water bridges: A:E.43, A:E.43
MPD.4: 8 residues within 4Å:- Chain A: G.39, Y.40, G.77, K.78, L.225, I.227
- Chain B: D.38, G.39
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:D.38
- Water bridges: B:D.38, B:G.39, A:L.225, A:I.227
- Hydrophobic interactions: A:Y.40, A:K.78, A:I.227
MPD.14: 7 residues within 4Å:- Chain B: E.43, W.45, R.75, Y.111, W.113, S.160, I.161
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:W.45, B:W.45, B:I.161
- Hydrogen bonds: B:R.75, B:R.75, B:Y.111, B:W.113
- Water bridges: B:E.43, B:K.79
MPD.15: 6 residues within 4Å:- Chain A: D.38, G.39
- Chain B: G.39, Y.40, L.225, I.227
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Water bridges: A:D.38, B:I.227
- Hydrophobic interactions: B:Y.40, B:I.227
- Hydrogen bonds: B:G.39
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 2 residues within 4Å:- Chain A: N.291, N.293
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.293
- Water bridges: A:N.291, A:N.291, A:N.293
GOL.6: 4 residues within 4Å:- Chain A: G.49, G.50, N.68, N.70
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.50
- Water bridges: A:N.68, A:V.69, A:N.70, A:N.70
GOL.7: 6 residues within 4Å:- Chain A: E.240, F.258, N.259, R.286, D.349, Y.350
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.259, A:N.259
- Water bridges: A:R.238, A:E.240, A:R.286, A:Y.350
GOL.8: 9 residues within 4Å:- Chain A: Y.264, N.290, N.291, G.342, T.343, W.344, D.345
- Ligands: CA.2, GOL.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.291, A:W.344
- Water bridges: A:N.290
GOL.9: 2 residues within 4Å:- Chain A: Y.264
- Ligands: GOL.8
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.264, A:Y.264
GOL.10: 6 residues within 4Å:- Chain A: S.31, N.32, K.46, D.47, S.48
- Chain B: A.317
9 PLIP interactions:3 interactions with chain B, 6 interactions with chain A- Water bridges: B:Y.315, B:V.318, B:V.318, A:N.32, A:S.48, A:G.49
- Hydrogen bonds: A:N.32, A:N.32, A:D.47
GOL.11: 5 residues within 4Å:- Chain A: Y.107, W.130, P.133, Q.169, W.171
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.107, A:P.133
- Water bridges: A:R.155, A:E.210
GOL.16: 9 residues within 4Å:- Chain B: I.227, G.228, K.278, N.280, S.281, S.282, N.322, N.323, R.354
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:I.227, B:K.278, B:S.282, B:N.322, B:N.323, B:R.354, B:R.354
GOL.17: 4 residues within 4Å:- Chain B: N.95, Y.96, G.181, S.222
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.95, B:S.222, B:S.222
- Water bridges: B:T.182, B:N.223
GOL.18: 1 residues within 4Å:- Chain B: Y.264
No protein-ligand interaction detected (PLIP)GOL.19: 6 residues within 4Å:- Chain A: A.317
- Chain B: S.31, N.32, K.46, D.47, S.48
6 PLIP interactions:1 interactions with chain A, 5 interactions with chain B- Water bridges: A:V.318, B:N.32, B:G.49
- Hydrogen bonds: B:N.32, B:N.32, B:D.47
GOL.20: 5 residues within 4Å:- Chain B: E.240, R.286, D.349, Y.350
- Ligands: CA.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.238, B:E.240
- Water bridges: B:N.259, B:N.259
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ihsanawati et al., A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1. To be Published
- Release Date
- 2007-03-20
- Peptides
- xylanase J: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.24 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ihsanawati et al., A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1. To be Published
- Release Date
- 2007-03-20
- Peptides
- xylanase J: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B