SMTL ID : 2der.2 (1 other biounit)

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: U.35 Chain B: S.25, G.27, V.28, D.29, S.30, G.139 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.25, B:G.27, B:V.28, B:D.29, B:D.29, B:S.30 PO4.2: 7 residues within 4Å: Chain A: U.35 Chain B: D.111, K.119, G.209, I.210, C.211, F.212 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.111, B:I.210, B:C.211, B:F.212 Salt bridges: B:K.119

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain B: E.80, L.81, H.82, T.83 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.83, B:T.83, B:T.83 Salt bridges: B:H.82 SO4.4: 3 residues within 4Å: Chain B: R.325, Q.326, T.327 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.327, B:T.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numata, T. et al., Snapshots of tRNA sulphuration via an adenylated intermediate. Nature (2006)

Release Date

2006-08-15

Peptides

tRNA-specific 2-thiouridylase mnmA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

tRNA-specific 2-thiouridylase mnmA

Related Entries With Identical Sequence