SMTL ID : 2df8.1

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x F1P: 1-O-phosphono-beta-D-fructopyranose(Non-covalent)

F1P.1: 14 residues within 4Å: Chain A: C.39, G.40, S.41, S.42, S.87, R.88, S.89, T.92, V.133, E.211, D.320, K.321, V.323 Chain B: H.227 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:C.39, A:S.41, A:S.42, A:R.88, A:R.88, A:S.89, A:T.92, A:V.133, A:E.211 Water bridges: A:C.39, A:C.39, A:S.41, A:S.42, A:R.88, A:S.89, A:M.135, A:V.323 F1P.4: 14 residues within 4Å: Chain A: H.227 Chain B: C.39, G.40, S.41, S.42, S.87, R.88, S.89, T.92, V.133, E.211, D.320, K.321, V.323 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:C.39, B:S.41, B:S.42, B:R.88, B:R.88, B:S.89, B:T.92, B:V.133, B:E.211, A:H.227 Water bridges: B:C.39, B:C.39, B:S.42, B:R.88, B:S.89, B:M.135, B:M.135, B:V.323

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: L.159, N.160, E.163, I.164, L.285, S.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.160, A:S.286 EDO.3: 4 residues within 4Å: Chain A: K.47, M.51, A.62 Chain B: Y.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.47 Water bridges: A:A.62 EDO.5: 4 residues within 4Å: Chain B: V.182, E.183, D.186, S.308 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizutani, H. et al., Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3. To be Published

Release Date

2006-08-27

Peptides

325aa long hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

325aa long hypothetical protein

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