- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 32 x IOD: IODIDE ION(Non-functional Binders)
- 6 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.7: 15 residues within 4Å:- Chain A: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276
- Chain B: F.317, S.318
15 PLIP interactions:13 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Q.163, A:T.208, A:T.212, A:K.276
- Hydrogen bonds: A:S.126, A:S.127, A:S.273, A:K.276, B:F.317, B:S.318
- Water bridges: A:Q.163, A:G.210, A:S.246
- Salt bridges: A:H.275, A:K.276
PLP.17: 15 residues within 4Å:- Chain A: F.317, S.318
- Chain B: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276
13 PLIP interactions:2 interactions with chain A, 11 interactions with chain B- Hydrogen bonds: A:F.317, A:S.318, B:S.126, B:S.127, B:S.273
- Hydrophobic interactions: B:Q.163, B:T.208, B:K.276
- Water bridges: B:Q.163, B:G.210, B:S.246
- Salt bridges: B:H.275, B:K.276
PLP.23: 15 residues within 4Å:- Chain C: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276
- Chain D: F.317, S.318
14 PLIP interactions:2 interactions with chain D, 12 interactions with chain C- Hydrogen bonds: D:F.317, D:S.318, C:S.126, C:S.127, C:S.273
- Hydrophobic interactions: C:Q.163, C:T.208, C:T.212, C:K.276
- Water bridges: C:Q.163, C:G.210, C:S.246
- Salt bridges: C:H.275, C:K.276
PLP.31: 15 residues within 4Å:- Chain C: F.317, S.318
- Chain D: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276
12 PLIP interactions:10 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Q.163, D:T.208, D:K.276
- Hydrogen bonds: D:S.126, D:S.127, D:S.273, C:F.317, C:S.318
- Water bridges: D:Q.163, D:S.246
- Salt bridges: D:H.275, D:K.276
PLP.40: 15 residues within 4Å:- Chain E: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276
- Chain F: F.317, S.318
14 PLIP interactions:12 interactions with chain E, 2 interactions with chain F- Hydrophobic interactions: E:Q.163, E:T.208, E:T.212, E:K.276
- Hydrogen bonds: E:S.126, E:S.127, E:S.273, F:F.317, F:S.318
- Water bridges: E:Q.163, E:G.210, E:S.246
- Salt bridges: E:H.275, E:K.276
PLP.49: 15 residues within 4Å:- Chain E: F.317, S.318
- Chain F: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276
14 PLIP interactions:12 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:Q.163, F:T.208, F:K.276
- Hydrogen bonds: F:S.126, F:S.127, F:S.273, F:K.276, E:S.318
- Water bridges: F:Q.163, F:G.210, F:S.246, E:F.317
- Salt bridges: F:H.275, F:K.276
- 13 x FMT: FORMIC ACID(Non-functional Binders)
FMT.8: 5 residues within 4Å:- Chain A: N.83, D.86
- Chain B: T.62, F.63, C.64
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:N.83, A:D.86, B:T.62, B:F.63, B:K.276
FMT.9: 5 residues within 4Å:- Chain A: T.62, F.63, C.64
- Chain B: N.83, D.86
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.62, A:F.63, A:C.64, B:N.83
FMT.10: 7 residues within 4Å:- Chain A: W.84, D.97, L.98, V.101, G.120, T.121, N.122
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.121, A:N.122
- Water bridges: A:K.87, A:D.97
FMT.18: 8 residues within 4Å:- Chain B: W.84, D.97, L.98, V.101, G.120, T.121, N.122, I.310
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.121, B:N.122
- Water bridges: B:K.87, B:G.311
FMT.24: 7 residues within 4Å:- Chain C: W.84, D.97, L.98, V.101, G.120, T.121, N.122
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.121, C:T.121, C:N.122
- Water bridges: C:D.97
FMT.32: 5 residues within 4Å:- Chain C: N.83, D.86
- Chain D: T.62, F.63, C.64
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:F.63, D:C.64, D:K.276, D:K.276, C:N.83
FMT.33: 5 residues within 4Å:- Chain C: T.62, F.63, C.64
- Chain D: N.83, D.86
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:N.83, D:D.86, C:F.63, C:C.64, C:K.276
FMT.34: 7 residues within 4Å:- Chain D: W.84, D.97, L.98, V.101, G.120, T.121, N.122
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:T.121, D:N.122
- Water bridges: D:K.87, D:D.97, D:G.120, D:T.121, D:G.311, D:G.311
FMT.41: 7 residues within 4Å:- Chain E: W.84, D.97, L.98, V.101, G.120, T.121, N.122
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.121, E:N.122
FMT.50: 5 residues within 4Å:- Chain E: N.83, D.86
- Chain F: T.62, F.63, C.64
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:N.83, F:T.62, F:F.63, F:C.64
FMT.51: 7 residues within 4Å:- Chain F: W.84, D.97, L.98, V.101, T.121, N.122
- Ligands: FMT.52
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:N.122
- Water bridges: F:K.87, F:D.97, F:G.120, F:T.121, F:G.311
FMT.52: 6 residues within 4Å:- Chain F: L.98, A.118, G.120, I.310, G.311
- Ligands: FMT.51
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:A.118, F:G.120, F:G.311
FMT.53: 4 residues within 4Å:- Chain F: P.111, P.113, R.290, D.291
4 PLIP interactions:4 interactions with chain F- Water bridges: F:A.112, F:K.114, F:V.119, F:E.292
- 1 x ACY: ACETIC ACID(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gut, H. et al., Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB. Embo J. (2006)
- Release Date
- 2006-06-20
- Peptides
- Glutamate decarboxylase beta: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 32 x IOD: IODIDE ION(Non-functional Binders)
- 6 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 13 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x ACY: ACETIC ACID(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gut, H. et al., Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB. Embo J. (2006)
- Release Date
- 2006-06-20
- Peptides
- Glutamate decarboxylase beta: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F