SMTL ID : 3fz7.1

Crystal structure of apo glutamate decarboxylase beta from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.125, S.126, S.127, S.273, H.275, K.276 Chain F: F.317, S.318 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain F Hydrogen bonds: A:S.126, A:S.127, F:F.317, F:S.318 Water bridges: A:I.124, A:G.125, A:S.127, A:E.128, A:Q.163 Salt bridges: A:H.275, A:K.276 PO4.2: 8 residues within 4Å: Chain B: G.125, S.126, S.127, S.273, H.275, K.276 Chain C: F.317, S.318 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:S.126, B:S.127, B:S.273, B:S.273, C:F.317, C:S.318, C:S.318 Water bridges: B:E.128, B:Q.163, B:K.276 Salt bridges: B:H.275, B:K.276 PO4.3: 8 residues within 4Å: Chain B: F.317, S.318 Chain C: G.125, S.126, S.127, S.273, H.275, K.276 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.126, C:S.127, B:S.318, B:S.318 Salt bridges: C:H.275, C:K.276 Water bridges: B:F.317 PO4.4: 9 residues within 4Å: Chain D: G.125, S.126, S.127, S.273, H.275, K.276, T.466 Chain E: F.317, S.318 9 PLIP interactions: 3 interactions with chain E, 6 interactions with chain D Hydrogen bonds: E:F.317, E:S.318, E:S.318, D:S.126, D:S.127, D:S.273 Water bridges: D:Q.163 Salt bridges: D:H.275, D:K.276 PO4.5: 9 residues within 4Å: Chain D: F.317, S.318 Chain E: G.125, S.126, S.127, S.273, H.275, K.276, T.466 11 PLIP interactions: 8 interactions with chain E, 3 interactions with chain D Hydrogen bonds: E:S.126, E:S.127, E:Q.163, E:S.273, E:T.466, D:S.318 Water bridges: E:E.128, D:F.317, D:F.317 Salt bridges: E:H.275, E:K.276 PO4.6: 8 residues within 4Å: Chain A: F.317, S.318 Chain F: G.125, S.126, S.127, S.273, H.275, K.276 15 PLIP interactions: 13 interactions with chain F, 2 interactions with chain A Hydrogen bonds: F:S.126, F:S.127, F:S.273, A:F.317, A:S.318 Water bridges: F:G.125, F:E.128, F:Q.163, F:Q.163, F:Q.163, F:K.276, F:K.276, F:K.276 Salt bridges: F:H.275, F:K.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of apo glutamate decarboxylase beta from Escherichia coli. To be Published

Release Date

2009-02-03

Peptides

Glutamate decarboxylase beta: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Glutamate decarboxylase beta

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