SMTL ID : 2dto.1

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 Complexed with ATP and Biotin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: G.47, R.48, R.51, K.52, W.53, E.54, K.100, N.103, D.104, K.111, N.131, P.137, A.140, Y.227, S.231, R.233 Ligands: BTN.2 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:R.48, A:E.54, A:N.103, A:D.104, A:K.111, A:N.131, A:N.131, A:Y.227, A:S.231 Water bridges: A:K.52, A:K.52, A:R.233, A:R.233, A:R.233, A:R.233 Salt bridges: A:R.48, A:R.48, A:R.51, A:R.51, A:K.100, A:K.100, A:K.111, A:K.111, A:K.111, A:R.233 pi-Stacking: A:W.53, A:W.53 ATP.3: 14 residues within 4Å: Chain B: G.47, R.48, R.51, K.52, W.53, E.54, N.103, D.104, K.111, N.131, P.137, A.140, Y.227 Ligands: BTN.4 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:R.48, B:E.54, B:N.103, B:D.104, B:K.111, B:N.131, B:N.131 Water bridges: B:Y.227, B:L.232, B:L.232 Salt bridges: B:R.48, B:R.48, B:R.51, B:R.51, B:R.51, B:K.100, B:K.100, B:K.111, B:K.111, B:K.111 pi-Stacking: B:W.53, B:W.53

2 x BTN: BIOTIN(Non-covalent)

BTN.2: 19 residues within 4Å: Chain A: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, W.53, L.62, S.63, N.103, D.104, K.111, G.114, V.115, L.116, I.128, G.129 Ligands: ATP.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.53, A:W.53 Hydrogen bonds: A:T.22, A:N.23, A:Q.42, A:Q.42, A:H.46, A:H.46, A:V.115 Water bridges: A:N.103 Salt bridges: A:K.111 BTN.4: 20 residues within 4Å: Chain B: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, W.53, W.61, L.62, S.63, N.103, D.104, K.111, G.114, V.115, L.116, I.128, G.129 Ligands: ATP.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.53, B:W.53, B:L.116 Hydrogen bonds: B:T.22, B:N.23, B:Q.42, B:Q.42, B:H.46, B:H.46, B:V.115 Water bridges: B:R.48 Salt bridges: B:K.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3. To be Published

Release Date

2007-01-13

Peptides

235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase

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