- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x NGA- GAL: beta-D-galactopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 4 residues within 4Å:- Chain A: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.121, A:D.123, A:D.132, A:H.137, H2O.5, H2O.5
MN.7: 5 residues within 4Å:- Chain B: E.121, D.123, D.132, H.137, S.147
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.121, B:D.123, B:D.132, B:H.137, H2O.15, H2O.15
MN.11: 4 residues within 4Å:- Chain C: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.121, C:D.123, C:D.132, C:H.137, H2O.25, H2O.25
MN.15: 4 residues within 4Å:- Chain D: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.121, D:D.123, D:D.132, D:H.137, H2O.35, H2O.35
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 7 residues within 4Å:- Chain A: R.53, S.56, A.58, T.59, T.231
- Chain B: S.12, E.13
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.56, A:S.56
- Salt bridges: A:R.53
- Water bridges: B:E.13
SO4.8: 5 residues within 4Å:- Chain B: R.53, S.56, A.58, T.59, T.231
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.56, B:S.56
- Water bridges: B:R.53
- Salt bridges: B:R.53
SO4.12: 5 residues within 4Å:- Chain C: R.53, S.56, A.58, T.59, T.231
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:S.56, C:S.56
- Water bridges: C:T.59, C:T.59
- Salt bridges: C:R.53
SO4.16: 5 residues within 4Å:- Chain D: R.53, S.56, A.58, T.59, T.231
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.56
- Water bridges: D:S.57
- Salt bridges: D:R.53
- 3 x GAL: beta-D-galactopyranose(Non-covalent)
GAL.5: 10 residues within 4Å:- Chain B: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, E.129, S.211, G.214
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.80, B:D.83, B:G.104, B:N.127, B:S.211, B:G.214
- Water bridges: B:Y.125, B:E.129
GAL.9: 9 residues within 4Å:- Chain C: D.80, D.83, G.103, G.104, Y.125, N.127, E.129, S.211, G.214
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:D.80, C:D.80, C:D.83, C:G.104, C:N.127, C:S.211, C:G.214
- Water bridges: C:E.129, C:G.213
GAL.13: 9 residues within 4Å:- Chain D: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, S.211, G.214
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:D.80, D:D.83, D:G.104, D:N.127, D:S.211
- Water bridges: D:E.129, D:L.212, D:G.214
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Natchiar, S.K. et al., Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. ACTA CRYSTALLOGR.,SECT.D (2006)
- Release Date
- 2006-11-07
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x NGA- GAL: beta-D-galactopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 3 x GAL: beta-D-galactopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Natchiar, S.K. et al., Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. ACTA CRYSTALLOGR.,SECT.D (2006)
- Release Date
- 2006-11-07
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D