- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GAL- GAL: beta-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.123, A:Y.125, A:D.132, H2O.1, H2O.1
CA.8: 4 residues within 4Å:- Chain B: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.123, B:Y.125, B:D.132, H2O.10, H2O.10
CA.11: 4 residues within 4Å:- Chain C: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.123, C:Y.125, C:D.132, H2O.21, H2O.21
CA.14: 4 residues within 4Å:- Chain D: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.123, D:Y.125, D:D.132, H2O.30, H2O.30
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.6: 4 residues within 4Å:- Chain A: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.121, A:D.123, A:D.132, A:H.137, H2O.1, H2O.1
MN.9: 4 residues within 4Å:- Chain B: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.121, B:D.123, B:D.132, B:H.137, H2O.10, H2O.10
MN.12: 4 residues within 4Å:- Chain C: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.121, C:D.123, C:D.132, C:H.137, H2O.21, H2O.21
MN.15: 4 residues within 4Å:- Chain D: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.121, D:D.123, D:D.132, D:H.137, H2O.30, H2O.30
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 7 residues within 4Å:- Chain A: R.53, S.56, A.58, T.59, T.231, T.232
- Chain B: S.12
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.56, A:S.56, A:T.232
- Water bridges: A:R.53, B:E.13, B:E.13
- Salt bridges: A:R.53
SO4.10: 5 residues within 4Å:- Chain B: R.53, S.56, T.59, T.231, T.232
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.56, B:T.232
- Water bridges: B:R.53, B:R.53, B:R.53, B:S.57
- Salt bridges: B:R.53
SO4.13: 6 residues within 4Å:- Chain C: R.53, S.56, A.58, T.59, T.231, T.232
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:S.56, C:T.232, C:T.232
- Water bridges: C:R.53, C:T.59, C:T.59
- Salt bridges: C:R.53
SO4.16: 6 residues within 4Å:- Chain D: R.53, S.56, A.58, T.59, T.231, T.232
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.56, D:T.232
- Salt bridges: D:R.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Natchiar, S.K. et al., Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. ACTA CRYSTALLOGR.,SECT.D (2006)
- Release Date
- 2006-11-07
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GAL- GAL: beta-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Natchiar, S.K. et al., Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. ACTA CRYSTALLOGR.,SECT.D (2006)
- Release Date
- 2006-11-07
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D