SMTL ID : 2e3n.1

Crystal structure of CERT START domain in complex with C6-ceramide (P212121)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x 6CM: N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE(Non-covalent)

6CM.1: 21 residues within 4Å: Chain A: F.93, R.99, W.102, E.103, Q.124, H.126, V.129, A.132, R.135, Y.139, N.161, I.180, V.182, Y.210, V.214, P.216, A.220, V.224, E.232, Y.233, F.236 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.129, A:R.135, A:I.180, A:V.214, A:P.216, A:A.220, A:V.224, A:E.232, A:Y.233, A:Y.233, A:F.236, A:F.236 Hydrogen bonds: A:R.99, A:E.103, A:E.103, A:Q.124, A:Q.124, A:Y.139, A:N.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudo, N. et al., Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2007-12-18

Peptides

Lipid-transfer protein CERT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipid-transfer protein CERT

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