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SMTL ID : 2e6u.2
(2 other biounits)
Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
CA
:
CALCIUM ION
(Non-covalent)
CA.1:
2 residues within 4Å:
Chain A:
E.92
,
E.95
4
PLIP interactions
:
3 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:E.92
,
A:E.92
,
A:E.95
,
H
2
O.1
CA.6:
2 residues within 4Å:
Chain B:
E.92
,
E.95
4
PLIP interactions
:
3 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:E.92
,
B:E.92
,
B:E.95
,
H
2
O.3
6 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.2:
2 residues within 4Å:
Chain A:
Y.112
,
S.117
Ligand excluded by PLIP
CL.3:
5 residues within 4Å:
Chain A:
P.32
,
L.63
Chain B:
P.32
,
L.63
Ligands:
CL.8
Ligand excluded by PLIP
CL.4:
3 residues within 4Å:
Chain A:
K.58
,
Y.59
Chain B:
E.61
Ligand excluded by PLIP
CL.7:
2 residues within 4Å:
Chain B:
Y.112
,
S.117
Ligand excluded by PLIP
CL.8:
5 residues within 4Å:
Chain A:
P.32
,
L.63
Chain B:
P.32
,
L.63
Ligands:
CL.3
Ligand excluded by PLIP
CL.9:
3 residues within 4Å:
Chain A:
E.61
Chain B:
K.58
,
Y.59
Ligand excluded by PLIP
2 x
COA
:
COENZYME A
(Non-covalent)
COA.5:
22 residues within 4Å:
Chain A:
G.29
,
S.31
,
K.33
,
R.36
,
D.37
,
V.55
,
N.56
,
P.57
,
K.58
,
Y.59
,
F.84
,
V.85
,
K.86
,
L.89
,
Y.93
,
Q.108
,
Y.109
,
N.110
,
T.111
,
C.132
,
M.134
,
R.135
21
PLIP interactions
:
21 interactions with chain A
Hydrophobic interactions:
A:T.111
Hydrogen bonds:
A:D.37
,
A:N.56
,
A:N.56
,
A:Y.59
,
A:Y.59
,
A:Y.93
,
A:Y.109
,
A:Y.109
,
A:N.110
Water bridges:
A:D.37
,
A:K.58
,
A:K.86
,
A:K.86
Salt bridges:
A:K.33
,
A:R.36
,
A:R.36
,
A:R.36
,
A:K.58
,
A:K.86
,
A:K.86
COA.10:
22 residues within 4Å:
Chain B:
G.29
,
S.31
,
K.33
,
R.36
,
D.37
,
V.55
,
N.56
,
P.57
,
K.58
,
Y.59
,
F.84
,
V.85
,
K.86
,
L.89
,
Y.93
,
Q.108
,
Y.109
,
N.110
,
T.111
,
C.132
,
M.134
,
R.135
22
PLIP interactions
:
22 interactions with chain B
Hydrophobic interactions:
B:T.111
Hydrogen bonds:
B:D.37
,
B:D.37
,
B:N.56
,
B:N.56
,
B:Y.59
,
B:Y.93
,
B:Y.93
,
B:Y.109
,
B:Y.109
,
B:N.110
Water bridges:
B:D.37
,
B:K.58
,
B:K.86
,
B:K.86
Salt bridges:
B:K.33
,
B:R.36
,
B:R.36
,
B:R.36
,
B:K.58
,
B:K.86
,
B:K.86
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kitago, Y. et al., Structure determination of a novel protein by sulfur SAD using chromium radiation in combination with a new crystal-mounting method. ACTA CRYSTALLOGR.,SECT.D (2005)
Release Date
2007-01-23
Peptides
hypothetical protein PH1109:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
X
B
X
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hypothetical protein PH1109
Toggle Identical (AB)
Related Entries With Identical Sequence
2d59.1
|
2d5a.1
|
2e6u.1
|
2e6u.3
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