SMTL ID : 2e6u.3 (2 other biounits)

Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.92, E.95 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.92, A:E.92, A:E.95, H2O.1 CA.6: 2 residues within 4Å: Chain B: E.92, E.95 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.92, B:E.92, B:E.95, H2O.3

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: Y.112, S.117 Chain B: R.114 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: P.32, L.63 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.58, Y.59 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.114 Chain B: Y.112, S.117 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: P.32, L.63 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: K.58, Y.59 Ligand excluded by PLIP

2 x COA: COENZYME A(Non-covalent)

COA.5: 24 residues within 4Å: Chain A: G.29, S.31, K.33, R.36, D.37, V.55, N.56, P.57, K.58, Y.59, F.84, V.85, K.86, L.89, Y.93, Q.108, Y.109, N.110, T.111, C.132, M.134, R.135 Chain B: M.1, E.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:T.111 Hydrogen bonds: A:D.37, A:N.56, A:N.56, A:Y.59, A:Y.59, A:Y.93, A:Y.109, A:Y.109, A:N.110 Water bridges: A:D.37, A:K.58, A:K.86, A:K.86 Salt bridges: A:K.33, A:R.36, A:R.36, A:R.36, A:K.58, A:K.86, A:K.86 COA.10: 24 residues within 4Å: Chain A: M.1, E.2 Chain B: G.29, S.31, K.33, R.36, D.37, V.55, N.56, P.57, K.58, Y.59, F.84, V.85, K.86, L.89, Y.93, Q.108, Y.109, N.110, T.111, C.132, M.134, R.135 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:T.111 Hydrogen bonds: B:D.37, B:D.37, B:N.56, B:N.56, B:Y.59, B:Y.93, B:Y.93, B:Y.109, B:Y.109, B:N.110 Water bridges: B:D.37, B:K.58, B:K.86, B:K.86 Salt bridges: B:K.33, B:R.36, B:R.36, B:R.36, B:K.58, B:K.86, B:K.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitago, Y. et al., Structure determination of a novel protein by sulfur SAD using chromium radiation in combination with a new crystal-mounting method. ACTA CRYSTALLOGR.,SECT.D (2005)

Release Date

2007-01-23

Peptides

hypothetical protein PH1109: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

hypothetical protein PH1109

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