SMTL ID : 2e6v.3 (4 other biounits)

Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man3GlcNAc-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 7 residues within 4Å: Chain A: D.83, Y.116, N.118, H.142, G.212, D.213, L.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.118, A:H.142, A:G.212, A:D.213, A:L.214, A:L.214

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.114, Y.116, N.118, D.145 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.114, A:D.114, A:Y.116, A:D.145, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satoh, T. et al., Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36. J.Biol.Chem. (2007)

Release Date

2007-07-24

Peptides

Vesicular integral-membrane protein VIP36: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Vesicular integral-membrane protein VIP36

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